ed5314aa98
Merge remote-tracking branch 'origin/master'
1 month ago
11c64cfc1a
Include all participants again.
1 month ago
a6a37c7bd9
Drop NaN targets.
This mirrors INNER join in merge_features_and_targets_for_individual_model.py:
data = pd.concat([sensor_features, targets[["target"]]], axis=1, join="inner")
1 month ago
9f5edf1c2b
Revert "Add a rule for model baselines."
The example was for a classification rather than regression problem.
This reverts commit 9ab0c8f289
1 month ago
4ad261fae5
Rename baseline features AGAIN.
Correct other mistakes.
1 month ago
9ab0c8f289
Add a rule for model baselines.
Add baselines and helper functions to main models dir.
1 month ago
570d2eb656
Add the file for population model to Snakefile.
1 month ago
f5688f6154
Add a rule to merge sensor and baseline features.
And select target as before.
1 month ago
b1f356c3f7
Extract a function to be used elsewhere.
1 month ago
7ff3dcf5fc
Move and rename target variable.
1 month ago
50c0defca7
Select target columns (no parsing necessary).
1 month ago
ac86221662
[WIP] Add a rule to parse targets.
Does nothing for now.
1 month ago
baa94c4c4e
Correct additional error in feature file naming.
Add the final feature file to the list in Snakefile.
1 month ago
d2fbef5234
Merge branch 'labels' of https://repo.ijs.si/junoslukan/rapids into labels
# Conflicts:
# src/features/phone_esm/straw/preprocess.py
1 month ago
d326a1b09d
Include the constant directly in main.py.
1 month ago
2e545e81f0
Include feature calculations for different scales.
1 month ago
cbc8ae4e03
Add necessary checks for empty data frames.
1 month ago
f50a13167e
Add feature files back to Snakefile.
1 month ago
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
And correct the newly named interim file.
1 month ago
e2ce68f591
Defer creation of feature files to esm_features rule.
1 month ago
751b04f3f4
Pass scale names to Snakemake correctly.
1 month ago
99245afca3
Try a different approach for preprocessing ESMs.
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
1 month ago
ed298a9479
Implement the basic feature extraction steps.
1 month ago
798ec973b4
[WIP] Add a rule for ESM features.
2 months ago
3af8de6235
Create feature provider script.
2 months ago
7173ca13e3
Rename a parameter.
2 months ago
9478dc94f2
Add an else.
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2 months ago
b18dba366e
Add an else.
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2 months ago
916bb21a53
Merge branch 'labels' into run_test_participant
2 months ago
c6144f8403
Reverse JCQ items.
2 months ago
fec7cc9550
Merge branch 'labels' into run_test_participant
2 months ago
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2 months ago
8ed7d23348
Merge branch 'labels' into run_test_participant
2 months ago
679f00dc19
Enable selecting any questionnaire as target.
2 months ago
1374eda171
Flatten questionnaire ID dict.
2 months ago
3e9cdde66e
Merge branch 'master' into run_test_participant
2 months ago
155395512c
Merge branch 'labels' into run_test_participant
2 months ago
cb116100dd
Move preprocessing to features.
2 months ago
19b9da0ba3
Separate function definitions from main.
2 months ago
83a8bb6689
Add an option to disable calculation of baseline features.
2 months ago
ef57103bac
Add questionnaire ID key.
2 months ago
5f293211a7
Reformat.
2 months ago
d470eef27e
Add a rule to preprocess and clean ESM.
2 months ago
b09522a8af
Merge branch 'labels' into run_test_participant
2 months ago
d4a4bbbff0
Remove unused columns.
2 months ago
085a6d144b
Add files to compute and create an empty script.
2 months ago
42d62f16d0
Add RAPIDS mandatory columns for ESM.
2 months ago
a159ca3d3a
Merge branch 'labels' into run_test_participant
2 months ago
2bef86b1da
Add a format for ESM and add to config.
2 months ago
d8e9a309f7
Rename features and write baseline_interim.
2 months ago
junos