ce04394679
Merge commit 'c05b047c2d9452151553961928c846c01d7395bc'
5 months ago
c05b047c2d
Correct outstanding baseline feature mistake.
8 months ago
53ec52a954
Disable (SOME) feature cleaning for ESM data.
8 months ago
144f0d0dcf
Account for missing baseline data.
8 months ago
ed5314aa98
Merge remote-tracking branch 'origin/master'
8 months ago
11c64cfc1a
Include all participants again.
8 months ago
a6a37c7bd9
Drop NaN targets.
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This mirrors INNER join in merge_features_and_targets_for_individual_model.py:
data = pd.concat([sensor_features, targets[["target"]]], axis=1, join="inner")
8 months ago
9f5edf1c2b
Revert "Add a rule for model baselines."
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The example was for a classification rather than regression problem.
This reverts commit 9ab0c8f289
8 months ago
4ad261fae5
Rename baseline features AGAIN.
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Correct other mistakes.
8 months ago
9ab0c8f289
Add a rule for model baselines.
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Add baselines and helper functions to main models dir.
8 months ago
570d2eb656
Add the file for population model to Snakefile.
8 months ago
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
8 months ago
b1f356c3f7
Extract a function to be used elsewhere.
8 months ago
7ff3dcf5fc
Move and rename target variable.
8 months ago
50c0defca7
Select target columns (no parsing necessary).
8 months ago
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
8 months ago
baa94c4c4e
Correct additional error in feature file naming.
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Add the final feature file to the list in Snakefile.
8 months ago
d2fbef5234
Merge branch 'labels' of https://repo.ijs.si/junoslukan/rapids into labels
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# Conflicts:
# src/features/phone_esm/straw/preprocess.py
8 months ago
d326a1b09d
Include the constant directly in main.py.
8 months ago
2e545e81f0
Include feature calculations for different scales.
8 months ago
cbc8ae4e03
Add necessary checks for empty data frames.
8 months ago
f50a13167e
Add feature files back to Snakefile.
8 months ago
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
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And correct the newly named interim file.
8 months ago
e2ce68f591
Defer creation of feature files to esm_features rule.
8 months ago
751b04f3f4
Pass scale names to Snakemake correctly.
8 months ago
99245afca3
Try a different approach for preprocessing ESMs.
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It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
8 months ago
ed298a9479
Implement the basic feature extraction steps.
8 months ago
798ec973b4
[WIP] Add a rule for ESM features.
8 months ago
3af8de6235
Create feature provider script.
8 months ago
7173ca13e3
Rename a parameter.
8 months ago
9478dc94f2
Add an else.
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This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
8 months ago
b18dba366e
Add an else.
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This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
9 months ago
916bb21a53
Merge branch 'labels' into run_test_participant
9 months ago
c6144f8403
Reverse JCQ items.
9 months ago
fec7cc9550
Merge branch 'labels' into run_test_participant
9 months ago
23f0aaba3a
Get the name of the questionnaire from Snakefile.
9 months ago
8ed7d23348
Merge branch 'labels' into run_test_participant
9 months ago
679f00dc19
Enable selecting any questionnaire as target.
9 months ago
1374eda171
Flatten questionnaire ID dict.
9 months ago
3e9cdde66e
Merge branch 'master' into run_test_participant
9 months ago
155395512c
Merge branch 'labels' into run_test_participant
9 months ago
cb116100dd
Move preprocessing to features.
9 months ago
19b9da0ba3
Separate function definitions from main.
9 months ago
83a8bb6689
Add an option to disable calculation of baseline features.
9 months ago
ef57103bac
Add questionnaire ID key.
9 months ago
5f293211a7
Reformat.
9 months ago
d470eef27e
Add a rule to preprocess and clean ESM.
9 months ago
b09522a8af
Merge branch 'labels' into run_test_participant
9 months ago
d4a4bbbff0
Remove unused columns.
9 months ago
085a6d144b
Add files to compute and create an empty script.
9 months ago
junos