53ec52a954
Disable (SOME) feature cleaning for ESM data.
2022-04-13 16:01:31 +02:00
3c058e4463
Add option to calculate features within windows and store it in CSV (all sensors).
2022-04-13 13:18:23 +00:00
144f0d0dcf
Account for missing baseline data.
2022-04-13 14:56:28 +02:00
ed5314aa98
Merge remote-tracking branch 'origin/master'
2022-04-12 17:27:25 +02:00
11c64cfc1a
Include all participants again.
2022-04-12 17:20:19 +02:00
a6a37c7bd9
Drop NaN targets.
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This mirrors INNER join in merge_features_and_targets_for_individual_model.py:
data = pd.concat([sensor_features, targets[["target"]]], axis=1, join="inner")
2022-04-12 17:01:49 +02:00
9f5edf1c2b
Revert "Add a rule for model baselines."
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The example was for a classification rather than regression problem.
This reverts commit 9ab0c8f289
2022-04-12 16:59:42 +02:00
4ad261fae5
Rename baseline features AGAIN.
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Correct other mistakes.
2022-04-12 16:55:01 +02:00
74cf4ada1c
Cr-feat window length for all empaticas sensors.
2022-04-12 14:00:44 +00:00
9ab0c8f289
Add a rule for model baselines.
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Add baselines and helper functions to main models dir.
2022-04-12 14:23:58 +02:00
570d2eb656
Add the file for population model to Snakefile.
2022-04-12 14:11:40 +02:00
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
2022-04-08 15:42:04 +02:00
b1f356c3f7
Extract a function to be used elsewhere.
2022-04-08 15:36:32 +02:00
7ff3dcf5fc
Move and rename target variable.
2022-04-06 18:21:09 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
2022-04-06 17:47:03 +02:00
baa94c4c4e
Correct additional error in feature file naming.
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Add the final feature file to the list in Snakefile.
2022-04-06 17:29:17 +02:00
d2fbef5234
Merge branch 'labels' of https://repo.ijs.si/junoslukan/rapids into labels
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# Conflicts:
# src/features/phone_esm/straw/preprocess.py
2022-04-05 19:28:37 +02:00
d326a1b09d
Include the constant directly in main.py.
2022-04-05 19:08:43 +02:00
2e545e81f0
Include feature calculations for different scales.
2022-04-05 19:05:34 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
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And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
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It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
1c42347b9b
Small changes.
2022-04-04 12:19:33 +00:00
c050174ca3
Various minimal changes.
2022-03-31 09:16:00 +00:00
f9e40711e7
Modified README for RAPIDS-CalculatingFeatures integration.
2022-03-30 16:17:07 +00:00
a357138f6e
Added CF for HRV and shortened test data
2022-03-30 15:01:24 +00:00
470993eeb0
Modification of getSampleRate method for all CF scripts.
2022-03-30 15:00:11 +00:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
3af8de6235
Create feature provider script.
2022-03-30 10:40:53 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
9478dc94f2
Add an else.
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This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2022-03-30 10:40:53 +02:00
ab0b9227d7
Added ACC calculated features and shorter version of ACC data.
2022-03-29 09:41:51 +00:00
a9244a60fc
Corrections for TEMP cf src script.
2022-03-28 14:26:37 +00:00
8b76c96e47
Cleaning existing CF mains' and preparing src script for ACC.
2022-03-28 14:18:29 +00:00
ca59a54d8f
Get a sample rate from two sequential timestamps.
2022-03-28 13:50:08 +00:00
393dab72f5
Added components for the temperature features extraction.
2022-03-28 12:37:02 +00:00
1902d02a86
Updating conda env.
2022-03-25 16:27:28 +00:00
f389ac9d89
Delete CF features folder
2022-03-25 16:24:52 +00:00
191e53e543
Added cf provider for EDA feature processing.
2022-03-23 15:13:53 +00:00
d3a3f01f29
Preparation for the EDA features integration from CF.
2022-03-22 15:36:52 +00:00
2da0911d4c
Skeleton file main.py for EDA CalcFt. integration.
2022-03-22 12:48:43 +00:00
bd5a811256
Shortening input CSVs' and added test for ACC.
2022-03-21 12:00:57 +00:00
d1c59de2e9
Add folder structure for CF testing and EDA test.
2022-03-21 10:40:18 +00:00
a80f7c0cc4
Change of the relative import statements.
2022-03-21 10:38:15 +00:00
d63158c199
Build calc features lib and related packages.
2022-03-21 08:28:28 +00:00
junos
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Primoz