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668 Commits (e40f0fd8dcb87a4cd780511402cca3bb8edd98c1)

Author SHA1 Message Date
Primoz e40f0fd8dc Bug fixed (mixed dtype warning). 2022-12-12 11:29:59 +00:00
Primoz 3b2001f570 Modify the stress_event logic so that it includes where stressfulness is 0. 2022-12-09 16:01:46 +00:00
Primoz 87e5209a9f Squashed commit of the following: 
commit 8a6b52a97c
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 29 11:35:49 2022 +0000

    Switch to 30_before ERS with corresponding targets.

commit 244a053730
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 29 11:19:43 2022 +0000

    Change output files settings to nonstandardized.

commit be0324fd01
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Nov 28 12:44:25 2022 +0000

    Fix some bugs and set categorical columns as categories dtypes.

commit 99c2fab8f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Nov 16 09:50:18 2022 +0000

    Fix a bug in the making of the individual model (when there is no target in the participants columns).

commit 286de93bfd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 15 11:21:51 2022 +0000

    Fix some bugs and extend ERS and cleaning scripts with multiple stress event targets logic.

commit ab803ee49c
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 15 10:14:07 2022 +0000

    Add additional appraisal targets.

commit 621f11b2d9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 15 09:53:31 2022 +0000

    Fix a bug related to wrong user input (duplicated events).

commit bd41f42a5d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Nov 14 15:07:36 2022 +0000

    Rename target_ to segmenting_ method.

commit a543ce372f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Nov 14 15:04:16 2022 +0000

    Add comments for event_related_script understanding.

commit 74b454b07b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Nov 11 09:15:12 2022 +0000

    Apply changes to string answers to make them language-generic.

commit 6ebe83e47e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 10 12:42:52 2022 +0000

    Improve the ERS extract method with a couple of validations.

commit 00350ef8ca
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 10 10:32:58 2022 +0000

    Change config for stressfulness event target method.

commit e4985c9121
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 10 10:29:11 2022 +0000

    Override stressfulness event target with extracted values from csv.

commit a668b6e8da
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 10 09:37:27 2022 +0000

    Extract ERS and stress event targets to csv files (completed).

commit 9199b53ded
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Nov 9 15:11:51 2022 +0000

    Get, join and start processing required ERS stress event data.

commit f3c6a66da9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 8 15:53:43 2022 +0000

    Begin with stress events in the ERS script.

commit 0b3e9226b3
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 8 14:44:24 2022 +0000

    Make small corrections in ERS file.

commit 2d83f7ddec
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 8 11:32:05 2022 +0000

    Begin the ERS logic for 90-minutes events.

commit 1da72a7cbe
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Nov 8 09:45:37 2022 +0000

    Rename targets method in config.

commit 9f441afc16
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Nov 4 15:09:04 2022 +0000

    Begin ERS logic for 90-minutes events.

commit c1c9f4d05a
Merge: 62f46ea3 7ab0280d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Nov 4 09:11:58 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit 62f46ea376
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Nov 4 09:11:53 2022 +0000

    Prepare method-based logic for ERS generating.

commit 7ab0280d7e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Nov 4 08:58:08 2022 +0000

    Correctly rename stressful event target variable.

commit eefa9f3f4d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 3 14:49:54 2022 +0000

    Add new target: stressfulness_event.

commit 5e8174dd41
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 3 13:52:45 2022 +0000

    Add new target: stressfulness_period.

commit 35c1a762e7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 3 13:51:18 2022 +0000

    Improve filtering by esm_session and device_id.

commit 02264b21fd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Nov 3 09:30:12 2022 +0000

    Add logic for target selection in ERS processing.

commit 0ce8723bdb
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Nov 2 14:01:21 2022 +0000

    Extend imputation logic within the cleaning script.

commit 30b38bfc02
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Oct 28 09:00:13 2022 +0000

    Fix the generating procedure of ERS file for participants with multiple devices.

commit cd137af15a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Oct 27 14:20:15 2022 +0000

    Config for 30 minute EMA segments.

commit 3c0585a566
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Oct 27 14:12:56 2022 +0000

    Remove obsolete comments.

commit 6b487fcf7b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Oct 27 14:11:42 2022 +0000

    Set E4 data yield to 1 if it is over 1. Optimize E4 data_yield script.

commit 5d17c92e54
Merge: a31fdd14 0d143e6a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 14:18:20 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit a31fdd1479
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 14:18:08 2022 +0000

    Start to test empatica_data_yield precieved error.

commit 936324d234
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 14:17:27 2022 +0000

    Switch config for 30 minutes event related segments.

commit da0a4596f8
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 14:16:25 2022 +0000

    Add additional ESM processing logic for ERS csv extraction.

commit d4d74818e6
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 14:14:32 2022 +0000

    Fix a bug - missing time_segment column when df is empty

commit 14ff59914b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 09:59:46 2022 +0000

    Fix to correct dtypes.

commit 6ab0ac5329
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 26 09:57:26 2022 +0000

    Optimize memory consumption with dtype definition while reading csv file.

commit 0d143e6aad
Merge: 8acac501 b92a3aa3
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 25 15:28:27 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit 8acac50125
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 25 15:26:43 2022 +0000

    Add safenet when features dataframe is empty.

commit b92a3aa37a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 25 15:25:22 2022 +0000

    Remove unwanted output or other error producing code.

commit bfd637eb9c
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 25 08:53:44 2022 +0000

    Improve strings formatting in straw_events file.

commit 0d81ad5756
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 19 13:35:04 2022 +0000

    Debug assignment of segments to rows

commit cea451d344
Merge: e88bbd54 cf38d9f1
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 18 09:15:06 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit e88bbd548f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 18 09:15:00 2022 +0000

    Add new daily segment and filter by segment in the cleaning script.

commit cf38d9f175
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Oct 17 15:07:33 2022 +0000

    Implement ERS generating logic.

commit f3ca56cdbf
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Oct 14 14:46:28 2022 +0000

    Start with ERS logic integration within Snakemake.

commit 797aa98f4f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 12 15:51:50 2022 +0000

    Config for ERS testing.

commit 9baff159cd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 12 15:51:23 2022 +0000

    Changes needed for testing and starting of the Event-Related Segments.

commit 0f21273508
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 12 12:32:51 2022 +0000

    Bugs fix

commit 55517eb737
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 12 12:23:11 2022 +0000

    Necessary commit before proceeding.

commit de15a52dba
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 11 08:36:23 2022 +0000

    Bug fix

commit 1ad25bb572
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Oct 11 08:26:17 2022 +0000

    Few modifications of some imputation values in cleaning script and feature extraction.

commit 9884b383cf
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Oct 10 16:45:38 2022 +0000

    Testing new data with AutoML.

commit 2dc89c083c
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Oct 7 08:52:12 2022 +0000

    Small changes in cleaning overall

commit 001d400729
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Oct 6 14:28:12 2022 +0000

    Clean features and create input files based on all possible targets.

commit 1e38d9bf1e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Oct 6 13:27:38 2022 +0000

    Standardization and correlation visualization in overall cleaning script.

commit a34412a18d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 5 14:16:55 2022 +0000

    E4 data yield corrections. Changes in overal cs - standardization.

commit 437459648f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Oct 5 13:35:05 2022 +0000

    Errors fix: individual script - treat participants missing data.

commit 53f6cc60d5
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Oct 3 13:06:39 2022 +0000

    Config and cleaning script necessary changes ...

commit bbeabeee6f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Oct 3 12:53:31 2022 +0000

    Last changes before processing on the server.

commit 44531c6d94
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 30 10:04:07 2022 +0000

    Code cleaning, reworking cleaning individual based on changes in overall script. Changes in thresholds.

commit 7ac7cd5a37
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 29 14:33:21 2022 +0000

    Preparation of the overall cleaning script.

commit 68fd69dada
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 29 11:55:25 2022 +0000

    Cleaning script for individuals: corrections and comments.

commit a4f0d056a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 29 11:44:27 2022 +0000

    Fillna for app foreground and activity recognition

commit 6286e7a44c
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 28 12:47:08 2022 +0000

    firstuseafter column removed from contextual imputation

commit 9b3447febd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 28 12:40:05 2022 +0000

    Contextual imputation correction

commit d6adda30cf
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 28 12:37:51 2022 +0000

    Contextual imputation on time(first/last) features.

commit 8af4ef11dc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 28 10:02:47 2022 +0000

    Contextual imputation by feature type.

commit 536b9494cd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 27 14:12:08 2022 +0000

    Cleaning script corrections

commit f0b87c9dd0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 27 09:54:15 2022 +0000

    Debugging of the empatica data yield integration.

commit 7fcdb873fe
Merge: 5c7bb0f4 bd53dc16
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 27 07:50:29 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit 5c7bb0f4c1
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 27 07:48:32 2022 +0000

    Config changes

commit bd53dc1684
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 26 15:54:00 2022 +0000

    Empatica data yield usage in the cleaning script.

commit d9a574c550
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 23 13:24:50 2022 +0000

    Changes in the cleaning script and preparation of empatica data yield method.

commit 19aa8707c0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 22 13:45:51 2022 +0000

    Redefined cleaning steps after revision

commit 247d758cb7
Merge: 90ee99e4 7493aaa6
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 21 07:18:01 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit 90ee99e4b9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 21 07:16:00 2022 +0000

    Remove TODO comments

commit 7493aaa643
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 20 12:57:55 2022 +0000

    Small changes in cleaning scrtipt and missing vals testing.

commit eaf4340afd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 20 08:03:48 2022 +0000

    Small imputation and cleaning corrections.

commit a96ea508c6
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 19 07:34:02 2022 +0000

    Fill NaN of Empatica's SD second order feature (must be tested).

commit 52e11cdcab
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 19 07:25:54 2022 +0000

    Configurations for new standardization path.

commit 92aff93e65
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 19 07:25:16 2022 +0000

    Remove standardization script.

commit 18b63127de
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 19 06:16:26 2022 +0000

    Removed all standardizaton rules and configurations.

commit 62982866cd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 16 13:24:21 2022 +0000

    Phone wifi visible inspection (WIP)

commit 0ce6da5444
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 16 11:30:08 2022 +0000

    kNN imputation relocation and execution only on specific columns.

commit e3b78c8a85
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 16 10:58:57 2022 +0000

    Impute selected phone features with 0.
    Wifi visible, screen, and light.

commit 7d85f75d21
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Sep 16 09:03:30 2022 +0000

    Changes in phone features NaN values script.

commit 385e21409d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 15 14:16:58 2022 +0000

    Changes in NaN values testing script.

commit 18002f59e1
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 15 10:48:59 2022 +0000

    Doryab bluetooth and locations features fill in NaN values.

commit 3cf7ca41aa
Merge: d27a4a71 d5ab5a03
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 14 15:38:32 2022 +0000

    Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning

commit d5ab5a0394
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Sep 14 14:13:03 2022 +0000

    Writing testing scripts to determine the point of manual imputation.

commit dfbb758902
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 13 13:54:06 2022 +0000

    Changes in AutoML params and environment.yml

commit 4ec371ed96
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Sep 13 09:51:03 2022 +0000

    Testing auto-sklearn

commit d27a4a71c8
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Sep 12 13:44:17 2022 +0000

    Reorganisation and reordering of the cleaning script.

commit 15d792089d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 1 10:33:36 2022 +0000

    Changes in cleaning script:
    - target extracted from config to remove rows where target is nan
    - prepared sns.heatmap for further missing values analysis
    - necessary changes in config and participant p01
    - picture of heatmap which shows the values state after cleaning

commit cb351e0ff6
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 1 10:06:57 2022 +0000

    Unnecessary line (rows with no target value will be removed in cleaning script).

commit 86299d346b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Sep 1 09:57:21 2022 +0000

    Impute phone and sms NAs with 0

commit 3f7ec80c18
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Aug 31 10:18:50 2022 +0000

    Preparation a) phone_calls 0 imputation b) remove rows with NaN target
 2022-12-08 16:04:39 +00:00
Primoz f78aa3e7b3 Preparation for cleaning & imputation 2022-08-26 10:56:14 +00:00
Primoz c498ecb742 Include baseline models (+corrections), disable columns drop in cleaning function. 2022-08-23 14:12:14 +00:00
Primoz f088e9586f Handle empty ACC.csv 2022-08-22 14:20:47 +00:00
Primoz 0aa0e82673 Handle empty Empatica csv files. 2022-08-22 14:18:12 +00:00
Primoz 4cfe5a3a98 Disable discarding rows if DATA_YIELD_RATIO_THRESHOLD==0. 2022-08-19 13:10:56 +00:00
Primoz 607da820f2 Configuration and cleaning changes 2022-08-18 14:21:05 +00:00
Primoz fb577bc9ad Squashed commit of the following: 
commit 43ecc243cb62bb31eed85cb477ca4131555c7fe7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 22 15:26:09 2022 +0000

    Adding TODO comments

commit 2df1ebf90c3a93812b112b8ed0ee4e23cd74533f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 21 13:59:23 2022 +0000

    README update

commit 5182c2b16dff3537aad42984b8ea5214743cdb32
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 21 11:03:01 2022 +0000

    Few corrections for all_cleaning

commit 3d9254c1b3bed6e95e631d4e0402548830a19534
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 21 10:28:05 2022 +0000

    Adding the min overlap for corr threshold and preservation of esm cols.

commit e27c49cc8fa4c51f9fe8e593a8d25e9a032ab393
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 21 09:02:00 2022 +0000

    Commenting and cleaning.

commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Jul 20 13:49:22 2022 +0000

    Environment version change.

commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 16:10:07 2022 +0000

    Enabled cleaning for all participants + standardization files.

commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 14:14:51 2022 +0000

    Features cleaning fixes after testing. Visualization script for phone features values.

commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 09:05:14 2022 +0000

    Revert "Necessary config changes."

    This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.

commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 13:19:47 2022 +0000

    Adding cleaning function condition and cleaning functionality.

commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:51:56 2022 +0000

    Translation of the cleaning individual RAPIDS function from R to py.

commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:02:18 2022 +0000

    Necessary config changes.

commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 15:26:00 2022 +0000

    Modified snakemake rule to dynamically choose script extention.

commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 14:43:08 2022 +0000

    Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.

commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 09:49:41 2022 +0000

    gitignore: adding required files so that RAPIDS can be run successfully.

commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 08:34:19 2022 +0000

    Standardization bug fixes

commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 14 15:28:02 2022 +0000

    Seperate rules for empatica vs. nonempatica standardization.
    Parameter in config that controls the creation of standardized merged files for individual and all participants..

commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 12 14:23:03 2022 +0000

    Preparing for final csvs' standardization.

commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:47 2022 +0000

    Revert "Changes in config to be reverted."

    This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.

commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:26 2022 +0000

    Enabled standardization for rest (previously active)  phone features.
    Testing still needed.

commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 09:07:55 2022 +0000

    Enabled standardization for phone calls.
    All steps completed and tested.

commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 07:47:51 2022 +0000

    Changes in config to be reverted.

commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:24 2022 +0000

    Standardization for the rest of the features.

commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:08 2022 +0000

    README update again
 2022-07-22 15:31:30 +00:00
Primoz 6ba4a66deb Squashed commit of the following: 
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Jul 20 13:49:22 2022 +0000

    Environment version change.

commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 16:10:07 2022 +0000

    Enabled cleaning for all participants + standardization files.

commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 14:14:51 2022 +0000

    Features cleaning fixes after testing. Visualization script for phone features values.

commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 09:05:14 2022 +0000

    Revert "Necessary config changes."

    This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.

commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 13:19:47 2022 +0000

    Adding cleaning function condition and cleaning functionality.

commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:51:56 2022 +0000

    Translation of the cleaning individual RAPIDS function from R to py.

commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:02:18 2022 +0000

    Necessary config changes.

commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 15:26:00 2022 +0000

    Modified snakemake rule to dynamically choose script extention.

commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 14:43:08 2022 +0000

    Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.

commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 09:49:41 2022 +0000

    gitignore: adding required files so that RAPIDS can be run successfully.

commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 08:34:19 2022 +0000

    Standardization bug fixes

commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 14 15:28:02 2022 +0000

    Seperate rules for empatica vs. nonempatica standardization.
    Parameter in config that controls the creation of standardized merged files for individual and all participants..

commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 12 14:23:03 2022 +0000

    Preparing for final csvs' standardization.

commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:47 2022 +0000

    Revert "Changes in config to be reverted."

    This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.

commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:26 2022 +0000

    Enabled standardization for rest (previously active)  phone features.
    Testing still needed.

commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 09:07:55 2022 +0000

    Enabled standardization for phone calls.
    All steps completed and tested.

commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 07:47:51 2022 +0000

    Changes in config to be reverted.

commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:24 2022 +0000

    Standardization for the rest of the features.

commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:08 2022 +0000

    README update again
 2022-07-20 13:51:22 +00:00
Primoz 788ac31190 Bug fix: if df has no rows write an empty zscore file. 2022-07-08 10:40:45 +00:00
Primoz 5a777ac79f Working version that integrates both phone and empatica feature calculations. 2022-07-07 15:00:47 +00:00
Primoz 0425403951 Merge branch 'master' of https://repo.ijs.si/junoslukan/rapids 2022-07-06 11:53:31 +00:00
Primoz 887fd7dc72 Merge branch 'empatica_calculating_features' 2022-07-06 11:53:21 +00:00
Primoz d2758eef46 Set not NaN sum insted of 0 sum for HRV features windows. 2022-07-06 07:36:35 +00:00
Primoz 2d5d23b615 Testing files change and remove standardization from hrv sensors main files. 2022-07-06 07:35:39 +00:00
Primoz 505c3a86b9 Testing different EDA findPeaks parameters. 2022-06-30 15:15:37 +00:00
Primoz c851ab0763 Fill EDA NaN values where numPeak is zero. Other small changes. 2022-06-21 14:09:49 +00:00
Primoz dda4554d46 Various small changes. 2022-06-15 13:57:46 +00:00
Primoz 212cf300f8 Debugging EDA signal - preliminary step for imputation. 2022-06-14 15:09:14 +00:00
Primoz 9ea39dc557 Standardization as a Snakefile's rule enabled for all E4 sensors. 2022-06-13 18:17:30 +00:00
Primoz 402059871f Making standardization as a rule. WIP: done only for BVP. 2022-06-13 14:12:03 +00:00
Primoz 094743244d Added SO feature for sum all rows that are non zero for BVP and IBI sensors. 2022-06-13 10:51:22 +00:00
primoz e1d7607de4 Extraction of additional SO features. Min/max has been changed to nsmallest/nlargest means. 2022-06-10 12:34:48 +00:00
primoz f371249b99 First order features standardization WIP 2022-06-09 13:35:15 +00:00
primoz 2c7ac21465 Added standardization on SO features. 2022-06-06 13:51:15 +00:00
primoz 2acf6ff9fb Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections. 2022-06-03 12:34:36 +00:00
primoz d300f0f8f0 Fixed RAPIDS bug: error when IBI.csv is empty. 2022-06-02 11:43:49 +00:00
Primoz 5532043b1f Patching IBI with BVP - completed. 2022-05-25 19:39:47 +00:00
Primoz bb62497ba6 Patching IBI with BVP - selecting appropriate pipeline entry point. WIP 2022-05-24 11:07:18 +00:00
Primoz 2a8f58f5c8 Patching IBI with BVP. WIP 2022-05-20 13:18:45 +00:00
Primoz 6864cfe775 Changes after thorough testing with available data. 2022-05-13 13:35:34 +00:00
Primoz c1564f0cae Changed wrapper method calculate_feature to its newest version (for TEMP and ACC). 2022-05-11 14:21:21 +00:00
Primoz 31e36e7400 Alternating Second order and full segment features corresponding to config settings. 2022-05-11 08:50:15 +00:00
Primoz 9cf9e1fe14 Testing and modifying the code with different E4 data. 2022-05-10 11:36:49 +00:00
Primoz f62a1302dd Cr-features corrections for ACC and TEMP sensors 2022-05-09 11:01:52 +00:00
Primoz 5638367999 Implementation of the second order features. 2022-04-25 13:07:03 +00:00
Primoz 66451160e9 Calculating HRV features with IBI.csv. 2022-04-20 10:44:51 +00:00
= 8c8fe1fec7 Modifications, mostly imports, after changes in cr-features module. 2022-04-19 13:24:46 +00:00
= 075c64d1e5 HRV: changed wrapper calcFeat method with specialized one. 2022-04-14 11:51:53 +00:00
junos c05b047c2d Correct outstanding baseline feature mistake. 2022-04-13 17:05:16 +02:00
junos 53ec52a954 Disable (SOME) feature cleaning for ESM data. 2022-04-13 16:01:31 +02:00
= 3c058e4463 Add option to calculate features within windows and store it in CSV (all sensors). 2022-04-13 13:18:23 +00:00
junos 144f0d0dcf Account for missing baseline data. 2022-04-13 14:56:28 +02:00
junos ed5314aa98 Merge remote-tracking branch 'origin/master' 2022-04-12 17:27:25 +02:00
junos a6a37c7bd9 Drop NaN targets. 
This mirrors INNER join in merge_features_and_targets_for_individual_model.py:

data = pd.concat([sensor_features, targets[["target"]]], axis=1, join="inner")
 2022-04-12 17:01:49 +02:00
junos 9f5edf1c2b Revert "Add a rule for model baselines." 
The example was for a classification rather than regression problem.

This reverts commit 9ab0c8f289.

# Conflicts:
#	rules/models.smk
 2022-04-12 16:59:42 +02:00
junos 4ad261fae5 Rename baseline features AGAIN. 
Correct other mistakes.
 2022-04-12 16:55:01 +02:00
= 74cf4ada1c Cr-feat window length for all empaticas sensors. 2022-04-12 14:00:44 +00:00