Primoz
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87e5209a9f
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Squashed commit of the following:
commit 8a6b52a97c
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 29 11:35:49 2022 +0000
Switch to 30_before ERS with corresponding targets.
commit 244a053730
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 29 11:19:43 2022 +0000
Change output files settings to nonstandardized.
commit be0324fd01
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Nov 28 12:44:25 2022 +0000
Fix some bugs and set categorical columns as categories dtypes.
commit 99c2fab8f9
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Nov 16 09:50:18 2022 +0000
Fix a bug in the making of the individual model (when there is no target in the participants columns).
commit 286de93bfd
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 15 11:21:51 2022 +0000
Fix some bugs and extend ERS and cleaning scripts with multiple stress event targets logic.
commit ab803ee49c
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 15 10:14:07 2022 +0000
Add additional appraisal targets.
commit 621f11b2d9
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 15 09:53:31 2022 +0000
Fix a bug related to wrong user input (duplicated events).
commit bd41f42a5d
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Nov 14 15:07:36 2022 +0000
Rename target_ to segmenting_ method.
commit a543ce372f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Nov 14 15:04:16 2022 +0000
Add comments for event_related_script understanding.
commit 74b454b07b
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Nov 11 09:15:12 2022 +0000
Apply changes to string answers to make them language-generic.
commit 6ebe83e47e
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 10 12:42:52 2022 +0000
Improve the ERS extract method with a couple of validations.
commit 00350ef8ca
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 10 10:32:58 2022 +0000
Change config for stressfulness event target method.
commit e4985c9121
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 10 10:29:11 2022 +0000
Override stressfulness event target with extracted values from csv.
commit a668b6e8da
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 10 09:37:27 2022 +0000
Extract ERS and stress event targets to csv files (completed).
commit 9199b53ded
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Nov 9 15:11:51 2022 +0000
Get, join and start processing required ERS stress event data.
commit f3c6a66da9
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 8 15:53:43 2022 +0000
Begin with stress events in the ERS script.
commit 0b3e9226b3
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 8 14:44:24 2022 +0000
Make small corrections in ERS file.
commit 2d83f7ddec
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 8 11:32:05 2022 +0000
Begin the ERS logic for 90-minutes events.
commit 1da72a7cbe
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Nov 8 09:45:37 2022 +0000
Rename targets method in config.
commit 9f441afc16
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Nov 4 15:09:04 2022 +0000
Begin ERS logic for 90-minutes events.
commit c1c9f4d05a
Merge: 62f46ea3 7ab0280d
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Nov 4 09:11:58 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit 62f46ea376
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Nov 4 09:11:53 2022 +0000
Prepare method-based logic for ERS generating.
commit 7ab0280d7e
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Nov 4 08:58:08 2022 +0000
Correctly rename stressful event target variable.
commit eefa9f3f4d
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 3 14:49:54 2022 +0000
Add new target: stressfulness_event.
commit 5e8174dd41
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 3 13:52:45 2022 +0000
Add new target: stressfulness_period.
commit 35c1a762e7
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 3 13:51:18 2022 +0000
Improve filtering by esm_session and device_id.
commit 02264b21fd
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Nov 3 09:30:12 2022 +0000
Add logic for target selection in ERS processing.
commit 0ce8723bdb
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Nov 2 14:01:21 2022 +0000
Extend imputation logic within the cleaning script.
commit 30b38bfc02
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Oct 28 09:00:13 2022 +0000
Fix the generating procedure of ERS file for participants with multiple devices.
commit cd137af15a
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Oct 27 14:20:15 2022 +0000
Config for 30 minute EMA segments.
commit 3c0585a566
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Oct 27 14:12:56 2022 +0000
Remove obsolete comments.
commit 6b487fcf7b
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Oct 27 14:11:42 2022 +0000
Set E4 data yield to 1 if it is over 1. Optimize E4 data_yield script.
commit 5d17c92e54
Merge: a31fdd14 0d143e6a
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 14:18:20 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit a31fdd1479
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 14:18:08 2022 +0000
Start to test empatica_data_yield precieved error.
commit 936324d234
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 14:17:27 2022 +0000
Switch config for 30 minutes event related segments.
commit da0a4596f8
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 14:16:25 2022 +0000
Add additional ESM processing logic for ERS csv extraction.
commit d4d74818e6
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 14:14:32 2022 +0000
Fix a bug - missing time_segment column when df is empty
commit 14ff59914b
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 09:59:46 2022 +0000
Fix to correct dtypes.
commit 6ab0ac5329
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 26 09:57:26 2022 +0000
Optimize memory consumption with dtype definition while reading csv file.
commit 0d143e6aad
Merge: 8acac501 b92a3aa3
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 25 15:28:27 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit 8acac50125
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 25 15:26:43 2022 +0000
Add safenet when features dataframe is empty.
commit b92a3aa37a
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 25 15:25:22 2022 +0000
Remove unwanted output or other error producing code.
commit bfd637eb9c
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 25 08:53:44 2022 +0000
Improve strings formatting in straw_events file.
commit 0d81ad5756
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 19 13:35:04 2022 +0000
Debug assignment of segments to rows
commit cea451d344
Merge: e88bbd54 cf38d9f1
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 18 09:15:06 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit e88bbd548f
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 18 09:15:00 2022 +0000
Add new daily segment and filter by segment in the cleaning script.
commit cf38d9f175
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Oct 17 15:07:33 2022 +0000
Implement ERS generating logic.
commit f3ca56cdbf
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Oct 14 14:46:28 2022 +0000
Start with ERS logic integration within Snakemake.
commit 797aa98f4f
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 12 15:51:50 2022 +0000
Config for ERS testing.
commit 9baff159cd
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 12 15:51:23 2022 +0000
Changes needed for testing and starting of the Event-Related Segments.
commit 0f21273508
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 12 12:32:51 2022 +0000
Bugs fix
commit 55517eb737
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 12 12:23:11 2022 +0000
Necessary commit before proceeding.
commit de15a52dba
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 11 08:36:23 2022 +0000
Bug fix
commit 1ad25bb572
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Oct 11 08:26:17 2022 +0000
Few modifications of some imputation values in cleaning script and feature extraction.
commit 9884b383cf
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Oct 10 16:45:38 2022 +0000
Testing new data with AutoML.
commit 2dc89c083c
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Oct 7 08:52:12 2022 +0000
Small changes in cleaning overall
commit 001d400729
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Oct 6 14:28:12 2022 +0000
Clean features and create input files based on all possible targets.
commit 1e38d9bf1e
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Oct 6 13:27:38 2022 +0000
Standardization and correlation visualization in overall cleaning script.
commit a34412a18d
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 5 14:16:55 2022 +0000
E4 data yield corrections. Changes in overal cs - standardization.
commit 437459648f
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Oct 5 13:35:05 2022 +0000
Errors fix: individual script - treat participants missing data.
commit 53f6cc60d5
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Oct 3 13:06:39 2022 +0000
Config and cleaning script necessary changes ...
commit bbeabeee6f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Oct 3 12:53:31 2022 +0000
Last changes before processing on the server.
commit 44531c6d94
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 30 10:04:07 2022 +0000
Code cleaning, reworking cleaning individual based on changes in overall script. Changes in thresholds.
commit 7ac7cd5a37
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 29 14:33:21 2022 +0000
Preparation of the overall cleaning script.
commit 68fd69dada
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 29 11:55:25 2022 +0000
Cleaning script for individuals: corrections and comments.
commit a4f0d056a0
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 29 11:44:27 2022 +0000
Fillna for app foreground and activity recognition
commit 6286e7a44c
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 28 12:47:08 2022 +0000
firstuseafter column removed from contextual imputation
commit 9b3447febd
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 28 12:40:05 2022 +0000
Contextual imputation correction
commit d6adda30cf
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 28 12:37:51 2022 +0000
Contextual imputation on time(first/last) features.
commit 8af4ef11dc
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 28 10:02:47 2022 +0000
Contextual imputation by feature type.
commit 536b9494cd
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 27 14:12:08 2022 +0000
Cleaning script corrections
commit f0b87c9dd0
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 27 09:54:15 2022 +0000
Debugging of the empatica data yield integration.
commit 7fcdb873fe
Merge: 5c7bb0f4 bd53dc16
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 27 07:50:29 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit 5c7bb0f4c1
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 27 07:48:32 2022 +0000
Config changes
commit bd53dc1684
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 26 15:54:00 2022 +0000
Empatica data yield usage in the cleaning script.
commit d9a574c550
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 23 13:24:50 2022 +0000
Changes in the cleaning script and preparation of empatica data yield method.
commit 19aa8707c0
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 22 13:45:51 2022 +0000
Redefined cleaning steps after revision
commit 247d758cb7
Merge: 90ee99e4 7493aaa6
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 21 07:18:01 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit 90ee99e4b9
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 21 07:16:00 2022 +0000
Remove TODO comments
commit 7493aaa643
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 20 12:57:55 2022 +0000
Small changes in cleaning scrtipt and missing vals testing.
commit eaf4340afd
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 20 08:03:48 2022 +0000
Small imputation and cleaning corrections.
commit a96ea508c6
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 19 07:34:02 2022 +0000
Fill NaN of Empatica's SD second order feature (must be tested).
commit 52e11cdcab
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 19 07:25:54 2022 +0000
Configurations for new standardization path.
commit 92aff93e65
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 19 07:25:16 2022 +0000
Remove standardization script.
commit 18b63127de
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 19 06:16:26 2022 +0000
Removed all standardizaton rules and configurations.
commit 62982866cd
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 16 13:24:21 2022 +0000
Phone wifi visible inspection (WIP)
commit 0ce6da5444
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 16 11:30:08 2022 +0000
kNN imputation relocation and execution only on specific columns.
commit e3b78c8a85
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 16 10:58:57 2022 +0000
Impute selected phone features with 0.
Wifi visible, screen, and light.
commit 7d85f75d21
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Sep 16 09:03:30 2022 +0000
Changes in phone features NaN values script.
commit 385e21409d
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 15 14:16:58 2022 +0000
Changes in NaN values testing script.
commit 18002f59e1
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 15 10:48:59 2022 +0000
Doryab bluetooth and locations features fill in NaN values.
commit 3cf7ca41aa
Merge: d27a4a71 d5ab5a03
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 14 15:38:32 2022 +0000
Merge branch 'imputation_and_cleaning' of https://repo.ijs.si/junoslukan/rapids into imputation_and_cleaning
commit d5ab5a0394
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Sep 14 14:13:03 2022 +0000
Writing testing scripts to determine the point of manual imputation.
commit dfbb758902
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 13 13:54:06 2022 +0000
Changes in AutoML params and environment.yml
commit 4ec371ed96
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Sep 13 09:51:03 2022 +0000
Testing auto-sklearn
commit d27a4a71c8
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Sep 12 13:44:17 2022 +0000
Reorganisation and reordering of the cleaning script.
commit 15d792089d
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 1 10:33:36 2022 +0000
Changes in cleaning script:
- target extracted from config to remove rows where target is nan
- prepared sns.heatmap for further missing values analysis
- necessary changes in config and participant p01
- picture of heatmap which shows the values state after cleaning
commit cb351e0ff6
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 1 10:06:57 2022 +0000
Unnecessary line (rows with no target value will be removed in cleaning script).
commit 86299d346b
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Sep 1 09:57:21 2022 +0000
Impute phone and sms NAs with 0
commit 3f7ec80c18
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Aug 31 10:18:50 2022 +0000
Preparation a) phone_calls 0 imputation b) remove rows with NaN target
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2022-12-08 16:04:39 +00:00 |