junos
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
junos
181e4f0118
Add parameters to yaml file.
...
And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
junos
ab84109d55
Prepare a function to compile participants data.
...
It combines functions from container.R
2021-11-24 19:07:56 +01:00
junos
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
junos
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
junos
3acf6ece14
Add a function to pull device IDs.
2021-11-24 18:23:53 +01:00
junos
8b2717122d
Add a function to get participants' IDs.
2021-11-24 18:05:17 +01:00
Meng Li
5bad3eb8b5
Data cleaning ( #166 )
...
* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
Meng Li
296960f425
Fix the bug of location doryab features when a participant is moving during the whole time segment
2021-11-18 18:42:19 -05:00
Meng Li
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
...
* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
junos
ed193d2290
Revert "Correct the name of a field."
...
This reverts commit b335561a55
.
It was actually correct.
2021-11-17 19:16:35 +01:00
junos
b335561a55
Correct the name of a field.
2021-11-17 18:50:06 +01:00
junos
fcec3e2f93
Implement the necessary functions for PSQL.
2021-11-17 18:49:25 +01:00
junos
7a1e4f7139
Add the format file copied from MySQL.
2021-11-17 18:46:16 +01:00
Meng Li
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
Meng Li
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
Meng Li
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
JulioV
2e553dc9e7
Add tqdm package to environment.yaml
2021-08-16 11:04:03 -04:00
Meng Li
3ac12e7dad
Fix the bug of step intraday features when INCLUDE_ZERO_STEP_ROWS is False
2021-08-11 12:40:40 -04:00
Weiyu
35eebe8a51
Bug fixed: set ratiovalidyielded mins/hours value to the range 0 to 1
2021-08-09 17:56:29 -04:00
JulioV
3e69966c91
Update error message
2021-08-04 15:33:02 -04:00
Shirley
4ddb2845a6
Update initialize_params
2021-08-04 15:33:02 -04:00
JulioV
834bd3b93d
Refactor in Python of Barnett provider
...
Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
Weiyu
7f1c502ea0
Fixed bug: Added local_segment column if no data left after filtered
2021-08-04 11:06:31 -04:00
Hannah Roberts
b52059b027
Ensure date/time format is maintained
...
Within the 'determine which is home' for loop, 'xx' is the midpoint of two datetime objects. When the midpoint is calculated to be midnight, only the date is returned. This can be replicated with:
mydates <- as.POSIXct("2018-01-01 00:00:00", tz = "UTC")
mydates
[1] "2018-01-01 UTC"
This results in 'hourofday' being NA as an hour cannot be found. By adding the suggested format wrapper, the time is maintained and 'hourofday' can be determined. It can then successfully be applied to the embedded if-statement within the loop.
mydates <- format(as.POSIXct("2018-01-01 00:00:00", tz = "UTC"), "%Y-%m-%d %H:%M:%S")
mydates
[1] "01-01-2018 00:00:00"
2021-07-23 10:12:11 -04:00
Weiyu
5a465873c4
Tested fitbit heartrate intraday feature
2021-07-21 10:24:02 -04:00
JulioV
6fa1875bf3
Add app foreground episode count
2021-07-01 16:20:16 -04:00
JulioV
bc5c0c9a4f
Fix app episode length bug
2021-07-01 16:20:16 -04:00
JulioV
065a926a87
Change own to custom categories name
2021-07-01 16:20:16 -04:00
JulioV
e74c745f86
Add own categories to app foreground features
2021-07-01 16:20:16 -04:00
JulioV
5892b6d838
Fix create_participants_files.R to handle numeric PIDs
2021-07-01 16:20:16 -04:00
Meng Li
97ef8a8368
Set color range and avoid SettingWithCopyWarning
2021-06-29 09:50:19 -04:00
Meng Li
1c57320ab3
Update segment labels and fix the bug when we do not have any labels for event segments
2021-06-29 09:49:24 -04:00
Meng Li
cefcb0635b
Update heatmap of recorded phone sensors
2021-06-29 09:49:24 -04:00
Meng Li
bc06477d89
Update heatmap of sensor row count
2021-06-29 09:49:24 -04:00
Meng Li
e98a8ff7ca
Update histogram of phone data yield
2021-06-29 09:49:24 -04:00
Meng Li
f436f1f530
Update heatmap of correlation matrix
2021-06-29 09:49:23 -04:00
Meng Li
4d37696158
Update heatmaps of overall data yield
2021-06-29 09:48:30 -04:00
Weiyu
f374c67bd5
Bug fixed: Added unknown activity case
2021-06-23 19:04:55 -04:00
Weiyu
3e4d167adc
Bug fixed: sort bt_address alphabetically before picking the most frequent bt_address
2021-06-22 17:40:00 -04:00
Meng Li
f248b6c97d
Fix bugs of Fitbit mutation scripts
2021-06-11 18:18:33 -04:00
kirtirajk
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
Weiyu
65d5cb7bd4
Bug fixed: countscansmostuniquedevice stays the same for all time segments
2021-06-10 10:49:22 -04:00
JulioV
e123a14082
Improve aware_csv msg when CSV files don't exist
2021-06-01 10:57:17 -04:00
Meng Li
9687081fbe
Refactor the rule phone_locations_add_doryab_extra_columns
2021-05-28 09:48:36 -04:00
Meng Li
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
JulioV
32472461ec
- Fix bug when no phone data yield is needed to process location data
...
- Remove location rows with the same timestamp based on their accuracy
2021-05-26 14:04:29 -04:00
Nikunj Goel
9b21196f35
Fixed `expected_minutes` to account for different time segments. ( #136 )
2021-05-26 11:44:48 -04:00
Meng Li
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
Nikunj Goel
5e451f99b0
Added phone keyboard features including docs/tests ( #134 )
2021-05-21 11:45:27 -04:00
JulioV
e9cd9c94d7
Fix PID matching when joining data from participants
2021-05-11 16:49:04 -04:00
JulioV
32818a4802
Fix parse of pids with more than 1 devices
2021-05-11 16:42:20 -04:00
Meng Li
809845143f
Test & fix bugs of sleep intraday features
2021-04-27 14:40:14 -04:00
Meng Li
7c7f34ec45
Test & fix bugs of sleep summary features
2021-04-27 14:40:14 -04:00
Meng Li
50fe09cfac
Update data streams mutation of fitbit data
2021-04-27 14:40:14 -04:00
Meng Li
66d9a9d640
Update params & docs of sleep features
2021-04-27 14:33:19 -04:00
JulioV
4beafd233d
Fix crash when scraping data for an app that does not exist
2021-04-22 14:28:52 -04:00
JulioV
ea8094e028
Fix length of periodic segments on days with DLS
2021-04-22 11:32:10 -04:00
JulioV
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
Meng Li
00a3335623
Add device_id column for sleep intraday episodes
2021-04-08 11:21:28 -04:00
JulioV
286d317af4
Fix crash when there are no periodic segments to assign
...
This includes a simplification of how periodic segments are computed based on all local dates in the data independently of their time zones
2021-04-07 12:03:25 -04:00
JulioV
9551669d47
Fix periodic segments bug when there are no segments to assign
2021-04-06 20:29:30 -04:00
Meng Li
78173c54ab
Convert date time object to string in assign_tz_code() function
2021-04-06 23:28:53 +00:00
JulioV
1025e6d9d8
Fix datetime labels of event segments across multiple tzs
2021-04-06 13:58:58 -04:00
Meng Li
8909876cff
Add local_segment column for phone data yield features
2021-04-05 21:13:36 +00:00
Meng Li
68125dc1bf
Fix the bug of phone data yield features when the input is empty
2021-04-05 20:57:05 +00:00
JulioV
46f5e24814
Fix Fitbit tz inference from phone data
2021-04-05 11:51:57 -04:00
JulioV
636b64c61a
Revert "Added more keyboard features."
...
This reverts commit 94c72e3172
.
2021-04-05 11:25:00 -04:00
Meng Li
68e12a2563
Fix bugs of bluetooth feature extraction when number of unique bt_address is 2
2021-04-05 14:09:50 +00:00
Meng Li
8414977331
Fix the bug of utils.py when one participant have multi timezones
2021-04-03 21:20:10 -04:00
nikunjgoel95
94c72e3172
Added more keyboard features.
2021-04-01 20:54:13 -04:00
Meng Li
1ea5b74eff
Fix the bug of utils.py when one participant have multi timezones
2021-03-31 19:34:14 -04:00
Meng Li
136dfef56b
Fix the bug of Analysis Workflows while parsing targets with updated segments
2021-03-30 16:41:50 -04:00
JulioV
99dae079d5
Add iOS BT and Wifi visible to formats for old devices
2021-03-30 15:32:50 -04:00
JulioV
30ad3cd586
Validate participant files without device ids
2021-03-28 15:29:08 -04:00
JulioV
87fbbbe402
Refactor and simplify time segments
2021-03-28 15:29:07 -04:00
JulioV
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
JulioV
d0858f8833
Fix overlapping periodic time segments
2021-03-28 15:29:07 -04:00
Meng Li
e177aa6386
Update create participant files section
2021-03-25 11:39:31 -04:00
Meng Li
a5eb535126
Update visualizations docs & add time flag for heatmap of overall data yield
2021-03-23 21:40:55 -04:00
nikunjgoel95
cfc5039918
Fixed the empty dataframe case in infer_home_locations.py and added array condition in doryab location
2021-03-19 11:15:57 -04:00
Meng Li
294d84277d
Fix bug of sleep intraday PRICE provider when the dataframe of a segment is empty
2021-03-17 15:21:31 -04:00
JulioV
771c14a928
Improve mysql containers error messages
2021-03-16 20:02:44 -04:00
JulioV
6e234f7951
Fix warn instead of stop when there are not device ids
2021-03-16 20:02:16 -04:00
JulioV
4c2f60fffd
Fix bugs in readable datetime and screen episodes
2021-03-16 20:01:43 -04:00
JulioV
bb737237d0
Fixes for aware_influxdb
2021-03-16 11:26:46 -04:00
JulioV
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
JulioV
f4b2bd1fb2
Cleanup data/
2021-03-14 13:36:22 -04:00
JulioV
42cee67664
Add aware_influxdb in beta
2021-03-14 13:33:43 -04:00
JulioV
3d4a04effe
Refactor testing
2021-03-14 00:09:08 -05:00
Meng Li
2b6447105a
Migrate analysis example to new data stream
2021-03-12 19:52:34 -05:00
JulioV
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
Meng Li
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
JulioV
6e898beca5
Add aware_csv
2021-03-11 19:32:11 -05:00
JulioV
13174b0c2a
Fix a bug when fitbit data is empty
2021-03-11 14:51:16 -05:00
JulioV
2ee45995f2
Update config docs and create participant files script
2021-03-11 14:40:33 -05:00
JulioV
1e66dad838
Fix bug in empatica_zip container script
2021-03-11 14:39:26 -05:00
JulioV
a79997e0ac
Add empatica_zip docs
2021-03-11 14:39:26 -05:00
JulioV
d48194fc07
Add fitbitparsed_csv
2021-03-11 14:39:26 -05:00
JulioV
b97b70e3a1
Add fitbitjson_csv
2021-03-11 14:39:26 -05:00
JulioV
470f4276af
Add fitbitparsed_mysql
2021-03-11 14:39:26 -05:00
JulioV
1b0ee4bbf0
Add sleep intraday to fitbitjson_mysql
2021-03-11 14:39:20 -05:00
JulioV
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
Meng Li
93baff9f83
Migrate phone keyboard sensor to new data stream
2021-03-11 14:37:22 -05:00
Meng Li
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
Meng Li
091f9c048a
Migrate phone apps notifications sensor to new data stream
2021-03-11 14:37:22 -05:00
Meng Li
b49dab0949
Migrate phone apps crashes sensor to new data stream
2021-03-11 14:37:22 -05:00
JulioV
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
9a276c1c66
Add steps summary to jsonfitbit_mysql
2021-03-11 14:37:22 -05:00
Meng Li
13290cd444
Migrate phone wifi visible sensor to new data stream
2021-03-11 14:36:52 -05:00
Meng Li
d42c6e9c91
Migrate phone wifi connected sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
bd4f647d37
Migrate phone messages sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
3a65b3864d
Migrate phone locations sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
7a50a52a9d
Migrate phone light sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
0e96f39599
Migrate phone bluetooth sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
6d06d2b1eb
Update MUTATION structure code & docs for AR, Apps foreground, and battery sensors
2021-03-11 14:35:34 -05:00
JulioV
6970954358
Change MUTATION structure
2021-03-11 14:35:34 -05:00
JulioV
58ef276179
Add stream_parameters arg to phone and empatica mutation scripts
2021-03-11 14:35:34 -05:00
JulioV
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
Meng Li
f7cf316133
Migrate phone battery sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
824523e32c
Migrate phone apps foreground sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
6b13c80e40
Fix bug while checking OS in stream_schema
2021-03-11 14:35:34 -05:00
JulioV
8c79cfc56f
Fix OS specific dependcies
2021-03-11 14:35:34 -05:00
JulioV
7372fca0dd
Fix bug when sensor is not available for an OS
2021-03-11 14:35:34 -05:00
JulioV
41711fcdb7
Rename download_data add support for py containers
2021-03-11 14:35:34 -05:00
JulioV
4b33ee43ba
Replace .env with credentials.yaml
2021-03-11 14:35:34 -05:00
JulioV
f65e3c8b1a
Migrate empatica sensors to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
2eae84ff05
Add docs of AR & conversation sensors
2021-03-11 14:35:34 -05:00
JulioV
fb054b539f
Add support for multiple time zones
2021-03-11 14:35:34 -05:00
JulioV
6c51c6c239
Move phone_conversation to aware_mysql stream
2021-03-11 14:35:34 -05:00
JulioV
ab1a3dbf79
Move phone_activity_recognition to aware_mysql stream
2021-03-11 14:35:34 -05:00
JulioV
dc11cb593d
Add support for smartphone sources and schemas.
...
Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
2021-03-11 14:35:33 -05:00
Meng Li
aac87311e8
Update socialjetlag feature of sleep intraday: replace bedtime with midpoint sleep
2021-03-04 15:49:25 -05:00
Meng Li
7b4598357d
Update the PRICE provider's example in sleep intraday docs
2021-02-26 17:47:01 -05:00
Meng Li
716ff3c592
Fix PRICE provider's bug when input is an empty dataframe
2021-02-26 17:47:01 -05:00
Meng Li
d74196cab4
Add sleep intraday features with PRICE provider
2021-02-26 17:47:01 -05:00
Meng Li
bedf7106e5
Fix sleep episodes bug
2021-02-26 17:47:01 -05:00
Meng Li
8377c12efb
Add sleep intraday features with RAPIDS provider
2021-02-26 17:47:01 -05:00
JulioV
724027e383
Small fixes to timeathome docs, add config validation
2021-02-24 17:49:22 -05:00
nikunjgoel95
3d6caea6c4
Added the timeathome feature using infer_home_location.py as interim file.
2021-02-24 16:57:25 -05:00
JulioV
9668dfac7a
Update docs to support Empatica
2021-02-21 17:32:41 -05:00
JulioV
faefca8b9a
Fix extra index column when dataset is empty
2021-02-21 17:32:41 -05:00
JulioV
2e46f56111
Empatica zips must be placed in pid folder and small fixes
2021-02-21 17:32:41 -05:00
Joe Kim
a26a44819a
Add stats features for empatica bvp, eda, ibi, temp
...
Fix Snakefile file indentention
2021-02-21 17:32:41 -05:00
Joe Kim
4469cfd6bb
add stats features for bvp, eda, ibi, temp
2021-02-21 17:32:41 -05:00
JulioV
c6dc7e675a
Add stats features for empatica heartrate
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Turn off all empatica compute features
2021-02-21 17:32:41 -05:00
JulioV
3bb0230bac
Add statistic features for empatica accelerometer
2021-02-21 17:32:41 -05:00
Juseong Kim
5f5f19866f
implement extract_empatica_data script
...
add support for all data types
Fix name comparison of zipped files
2021-02-21 17:32:41 -05:00
JulioV
4b9857562b
Add support for zip input files
2021-02-21 17:32:41 -05:00
JulioV
8c726f5d4f
Start empatica support
2021-02-21 17:32:41 -05:00
JulioV
d8813e2d04
Fix bug when any of the rows from any sensor do not belong a time segment
2021-02-09 14:51:54 -05:00
Meng Li
b67f990816
Add new `FITBIT_DATA_YIELD` `RAPIDS` provider
2021-02-02 18:30:21 -05:00
nikunjgoel95
9b248c449d
Fixing and adding MAXIMUM_ROW_DURATION.
2021-02-02 11:38:13 -05:00
nikunjgoel95
e7fc8f44f2
Removing Sampling Frequency and fixing ROG, location entropy and normalized location entropy.
2021-02-02 11:38:08 -05:00
nikunjgoel95
0bbf15f52e
Fixed the features dependent on time duration.
2021-02-02 11:36:14 -05:00
Meng Li
3d0d062491
Fix HR summary bug: do not consider rows with restinghr=0
2021-02-01 17:29:30 -05:00
Meng Li
f83c5a585e
Fix HR intraday bug: minutesonZONE features are 0
2021-02-01 13:57:12 -05:00
JulioV
aefc794274
Fix location processing when certain columns don't exist
2021-02-01 11:49:22 -05:00
abhineethreddyk
dbf57f43f3
Updated battery feature and its testing for periodic
2021-01-31 20:24:43 -05:00
Meng Li
25a3492eba
Drop rows without "assigned_segments" column before feature extraction
2021-01-21 19:41:17 -05:00
Meng Li
797de54b34
Fix merge bug of fetch_provider_features() function
2021-01-21 14:58:31 -05:00
Meng Li
5f60aac5c8
Fix KeyError bug of parsing steps data
2021-01-20 11:26:28 -05:00
JulioV
d0fe4d4c28
Add ALL_RESAMPLED flag and accuracy limit
2021-01-14 14:34:25 -05:00
JulioV
38fadbf202
Feature/doryab location clustering ( #111 )
...
* Added OPTICS - lightweight clustering algorithm.
* Changed the error message for inconsistent parameters in CONFIG
* Removing hardcoded values and changing default EPS value in the clustering algorithm.
* Added Observation in Doryab Feature docs.
Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-14 14:22:51 -05:00
JulioV
b7ba3c6407
Feature/location doryab fix ( #109 )
...
* Fixing the doryab location features for context of clustering.
* Fixed the wrong shifting while calculating the distance.
* Refractoring the haversine function
* Removed comments.
* Cleaning parts of the code.
* Updated the documentation for CLUSTER_ON parameter.
Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-07 16:20:46 -05:00
JulioV
4926497ae2
Fix bugs in Fitbit data parsing
...
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
2021-01-06 11:43:01 -05:00
JulioV
5203aa60d1
Fix bugs in create participants files script
...
- The PHONE and FITBIT flags were mixed up
- The start/end dates from the CSV file weren't being parsed correctly
2021-01-06 11:14:15 -05:00
JulioV
3a80f93771
Fix segment error when device ids is empty
2021-01-06 11:12:10 -05:00
JulioV
51c7739bfc
Revert "Start support for phone_keyboard"
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This reverts commit dd95b4f941
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2020-12-20 16:29:40 -05:00
JulioV
dd95b4f941
Start support for phone_keyboard
2020-12-14 13:42:22 -05:00
JulioV
63202c62cc
Fix BT doryab bug and update change log
2020-12-12 17:11:48 -05:00
JulioV
05627296f4
Fix filter_data_by_segment bug
2020-12-12 17:10:59 -05:00
JulioV
5bd1bfe856
Add new bluetooth doryab features and deprecate rapids provider
2020-12-12 17:01:46 -05:00
JulioV
266dd28d02
Add bluetooth doryab features
2020-12-11 12:03:22 -05:00
JulioV
ae21c076cd
Fix conversation data bug
2020-12-04 15:23:08 -05:00
JulioV
9a02e93b25
Swap RMySQL for RMariaDB
2020-12-04 14:57:13 -05:00
Meng Li
9a0e57301b
Update 4 plots for time_segments
2020-12-03 21:00:32 -05:00
JulioV
614e759551
Refactor day segments to time segments
2020-12-02 18:41:03 -05:00
JulioV
c24cba8679
Event segments' device id can be one of any assigned to a participant
2020-12-02 17:17:55 -05:00
Meng Li
0bd43c139c
Update plot#1: histogram_phone_data_yield
2020-12-01 14:21:33 -05:00
Meng Li
016bdbfe8c
Update Python feature scripts to add sensor and provider names automatically
2020-11-30 14:42:19 -05:00
Meng Li
70991d6667
Add dates filter while parsing fitbit data
2020-11-30 12:34:14 -05:00
Meng Li
5178be585d
Rename modeling.py to modelling.py & Update example_config.yaml
2020-11-25 22:35:38 -05:00
JulioV
5f51c94ac6
Separate device data configuration and update docs
2020-11-25 19:42:11 -05:00
Meng Li
b4a512faf3
Add analysis example workflow
2020-11-25 16:34:05 -05:00
JulioV
ced3305ddb
Update R feature scripts to add sensor and provider names automatically
2020-11-25 14:49:42 -05:00
JulioV
f02ca2624d
Add phone yield sensor
2020-11-24 19:12:16 -05:00
JulioV
555811211d
Fix column check in day segment compute
2020-11-24 14:51:06 -05:00
Meng Li
767e838c87
Fix HR&Sleep bugs
2020-11-24 13:43:24 -05:00
Meng Li
deba6b9e4f
Update sleep summary features for segments
2020-11-23 12:01:00 -05:00
Meng Li
10384204a1
Update Fitbit HR feature name
2020-11-20 11:31:16 -05:00
Meng Li
d3241c79f1
Update filter_data_by_segment() function: call chunk_episodes() inside the filter function
2020-11-19 17:27:53 -05:00
JulioV
895b70719e
Update minimal example and fix create participants bug
2020-11-17 17:27:48 -05:00
Meng Li
a71efd6b85
Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY
2020-11-11 21:16:48 -05:00
Meng Li
9fc36f67e2
Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY
2020-11-11 17:27:46 -05:00
Meng Li
39632c66f5
Update steps features for segments
2020-10-30 18:57:04 -04:00
JulioV
7f7eac0769
Merge branch 'ds2' into day_segments
2020-10-28 17:53:00 -04:00
JulioV
c5197b6c5f
Merge branch 'master' into ds2
2020-10-28 17:50:37 -04:00
Meng Li
93055dacee
Update HR main.py
2020-10-28 17:02:21 -04:00
JulioV
f36a7052b3
Add config update file to create participants file
2020-10-28 14:11:41 -04:00
Meng Li
84068ab33c
Update fitbit_parse_steps.py: add summary data
2020-10-28 13:07:35 -04:00
Meng Li
ed7585c2bf
Update heartrate features for segments
2020-10-27 17:55:57 -04:00
JulioV
d5931c75d8
Refactor script to create participants files
2020-10-27 17:13:16 -04:00
Meng Li
25e1f1fbb5
Update Python chunk_episodes
2020-10-26 18:47:57 -04:00
JulioV
b986599226
Add support to read fitbit data from csv files
2020-10-26 17:17:53 -04:00
JulioV
f0a551164a
Fix AR names
2020-10-26 15:44:21 -04:00
JulioV
e10e030baf
Unify AR iOS walking and running conversion
2020-10-26 15:44:09 -04:00
JulioV
234588c94d
Expose episode threshold between rows parameter
2020-10-26 15:28:19 -04:00
JulioV
2fe5a0d822
Update R chunk_episodes
2020-10-26 15:10:32 -04:00
JulioV
c78ccfced7
Remove microseconds from chuncked date times
2020-10-26 15:03:31 -04:00
Meng Li
2b7bd0ae6e
Modify output format of chunk_episodes() function
2020-10-26 13:00:53 -04:00
JulioV
1d04aa6807
Add check for non-overlapping event day segments
2020-10-23 12:15:26 -04:00
JulioV
86509207ac
Turn off warnings for tidyverse and dplyr
2020-10-23 10:41:00 -04:00
JulioV
c41d24df45
Fix bug when there are no event segments for participants
2020-10-22 16:41:26 -04:00
JulioV
47adb8bc4b
Add tz support to fitbit
2020-10-22 14:38:40 -04:00
JulioV
cff83a7ceb
Implement parse fitbit data
2020-10-22 13:08:52 -04:00
JulioV
c266f6dd10
Update participant files structure and fitbit download rule
2020-10-20 19:12:01 -04:00
Meng Li
8c0f6a000d
Fix chunk_episodes() bugs: set segment_start_timestamp as int
2020-10-19 19:36:26 -04:00
JulioV
24bf62a7ab
Update file names
2020-10-19 15:07:12 -04:00
Meng Li
ac9cf92732
Add accelerometer features of PANDA provider
2020-10-13 17:54:53 -04:00
Meng Li
29dcd1f284
Add accelerometer features of RAPIDS provider
2020-10-13 11:42:36 -04:00
nikunjgoel95
dcf1255b4b
Fix runtime bug in Radius of Gyration of Doryab Location.
2020-10-10 13:26:06 -04:00
JulioV
3996e0ab17
Fix bug when episodes are empty
2020-10-09 17:00:20 -04:00
JulioV
2c7beec1da
Fix NAs are now 0 in some calls and msgs features
2020-10-08 12:23:54 -04:00
Meng Li
236b1cd809
Update AR module for segments; Refactor input format
2020-10-07 18:11:06 -04:00
JulioV
6b1e006b82
Refactor fused location resampling
2020-10-07 11:51:31 -04:00
nikunjgoel95
80ff3f4229
Cleaning the Doryab location features code to fix the bug of Emoty dataframe in ClusterAndLabel
2020-10-01 11:34:41 -04:00
JulioV
c0c32d9f9e
Fix bug in assign date segment when file is empty
2020-09-30 14:53:59 -04:00
Meng Li
bccc9a0697
Move deduplicate_episodes() function into chunk_episodes() function; rename "time_diff" with duration
2020-09-29 18:05:25 -04:00
JulioV
39f6e3841c
Update AR episode computation
2020-09-29 17:26:43 -04:00
JulioV
10b0386c8f
Merge branch 'day_segments' of https://github.com/carissalow/rapids into day_segments
2020-09-29 17:24:41 -04:00
Meng Li
f1717e59e7
Update screen&battery episodes features with different segment format
2020-09-29 17:13:34 -04:00
JulioV
499b92e240
Fix missing R library
2020-09-29 15:35:44 -04:00
JulioV
0dafdd1340
Redo resample episodes in R, new battery episodes
2020-09-29 15:18:48 -04:00
JulioV
a6b99259f7
Fix bug when filtering by day segment and there are no rows belonging to that segment
2020-09-28 15:53:38 -04:00
nikunjgoel95
4f64f7eeef
Fix the bug on ClusterAndLabel when recieving empty data.
2020-09-28 15:02:03 -04:00
JulioV
9e15f46fc3
Update day segment format
2020-09-28 11:38:47 -04:00
JulioV
303d1472ed
Change how we compute AR episodes
2020-09-22 17:32:51 -04:00
JulioV
a851a460e4
Change the way we compute battery episodes
2020-09-22 16:53:51 -04:00
JulioV
47ab0a2ce5
Fix phone_sensed_bins when there is no data
2020-09-21 10:28:42 -04:00
Meng Li
f806cb44ac
Fix the bug of screen duration features for different segments
2020-09-18 20:25:29 -04:00
kaguillera
ca14eba8e1
Initial testing restructure for 30mins segments
2020-09-18 19:14:07 -04:00
JulioV
3022a60fe9
Fix day segment error with no rows
2020-09-18 17:19:11 -04:00
JulioV
3c27bb2d18
Refactor frequency segments and fix periodic labels
2020-09-18 16:29:48 -04:00
JulioV
06bb2b9c73
Fix accuracy bug in barnett location features
2020-09-18 11:26:10 -04:00
JulioV
4dc8d38c66
Optimise assign to day segment
2020-09-16 14:54:20 -04:00