junos
/
rapids
1
0
Fork 0
Code Issues Pull Requests Projects Releases Wiki Activity
1,384 Commits
15 Branches
26 Tags
26 MiB
Commit Graph

288 Commits (bd53dc1684b2b6fadf5653e2a9cc00c953410149)

Author SHA1 Message Date
JulioV e643881058 Migrate light to new file structure 2020-09-01 12:01:24 -04:00
JulioV eda58d9d2c Migrate wifi to new file structure 2020-08-31 18:51:06 -04:00
JulioV 77d9d8f025 Migrate bluetooth to new file structure 2020-08-31 17:08:26 -04:00
JulioV 132311da77 Migrate messages to new file structure 2020-08-31 13:34:15 -04:00
JulioV e269062439 Migrate calls to new provider file structure 2020-08-28 17:50:49 -04:00
JulioV 011b9736d5 Refactor the function to fetch provider features 2020-08-28 17:40:23 -04:00
JulioV b0f1477d7e Migrate location providers to new file structure and segments 2020-08-28 13:53:00 -04:00
JulioV 14d2d694ce Migrate messages to new segments 2020-08-26 13:01:58 -04:00
JulioV 31ec5b0da4 Finalise new day segment structure with calls as example 2020-08-26 12:09:53 -04:00
JulioV 026d056378 Simplify window workflow 2020-08-20 14:51:22 -04:00
JulioV a0b5b5982b Setup rules and files to support multiple 2020-08-20 14:45:09 -04:00
Meng Li 00385dc54d Discard useless parameters and related code of example 2020-08-17 10:48:15 -04:00
JulioV b83f8ead44 Refactor snakefiles to smk files and create common.smk 2020-08-11 18:45:50 -04:00
JulioV 3f48a47a14 Fix optional input files for phone sensed bins 2020-08-11 18:02:52 -04:00
JulioV 08ce250839 Unify conversation timestamp for ios 2020-08-11 16:18:06 -04:00
nikunjgoel95 df7a52cd6c Added Sampling Frequency to Doryab Location Features. 2020-08-05 13:02:34 -04:00
Meng Li 973e1669fa Move baselines into a folder; rename column of "num_of_participants" with "num_of_rows" in modeling.py 2020-08-05 07:51:35 -04:00
Meng Li 0b65cc0546 Add example_profile 2020-08-03 17:30:15 -04:00
Meng Li c2b25a146d Replace sensor name with table name in heatmap_days_by_sensors section 2020-08-03 15:19:45 -04:00
Meng Li e13b89b125 Add restore_sql_file rule; notsummarised module; diff platforms for heatmap_days_by_sensors 2020-08-03 13:09:16 -04:00
Meng Li 21c3251066 Delete mystudy.snakefile and add all rules to models.snakefile 2020-07-29 15:25:26 -04:00
Meng Li c498b8d2df Add hours and bins thresholds for analysis section 2020-07-27 22:59:32 -04:00
Meng Li 93157db210 Data cleaning section: replace "day_type" with "day_idx" 2020-07-27 18:27:36 -04:00
Meng Li af6678c70c Update visualization section: add MIN_VALID_BINS_PER_HOUR 2020-07-26 20:11:25 -04:00
JulioV 388f09a003 Add missing wifi table 2020-07-24 16:35:41 -04:00
Meng Li b3aa4d82e1 Overall compliance heatmap: shows all dates for all participants (only supports last certain dates previously) 2020-07-24 12:58:48 -04:00
JulioV 5f771618ae Add screen episode filter parameters 2020-07-23 14:38:59 -04:00
nikunjgoel95 faad8f5a8f Added minutes of data in a day/epoch. 2020-07-23 14:23:32 -04:00
Meng Li b0354393ae Add "corr_method" param to heatmap_features_correlations.py 2020-07-22 20:00:14 -04:00
Meng Li c135b6ef78 Add visualization for data exploration 2020-07-22 16:47:32 -04:00
Meng Li 124843f96e Make phone_valid_sensed_days rule works for different min_valid_hours_per_day thresholds 2020-07-21 20:41:24 -04:00
nikunjgoel95 0ada1292ed Added maximum_gap_allowed parameter 2020-07-21 18:56:43 -04:00
nikunjgoel95 024ae1a549 Added Doryab's location features to rapids. 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-07-16 14:26:43 -04:00
JulioV d2704296f3 Refactor valid sensed bins and days 2020-07-09 13:01:50 -04:00
JulioV 06edf53016 Add support for multi-platform participants 2020-06-30 17:34:18 -04:00
JulioV 6608e47918
Fix conversation plugin bug that mixed android tables with ios 2020-06-25 16:38:24 -04:00
JulioV 1bdb52dd65 Add functionality to exlcude step data based on sleep 2020-06-24 13:33:58 -04:00
JulioV 36017d5dca Refactor Snakefile and docs. Rename SMS scripts 2020-06-23 11:33:34 -04:00
Meng Li a121c0fe7b Split accelerometer features in config file; drop count; add more stats features 2020-06-22 12:01:17 -04:00
nikunjgoel95 1409de2832 Added Converstion Features. 
Updated config.yaml, Snakefile, Features.Snakefile and documentation.
 2020-06-19 01:27:28 -04:00
Meng Li e133b8b530 Refactor fitbit sleep features 2020-06-12 18:44:05 -04:00
Meng Li dcc7ca14e3 Refactor fitbit heartrate features 2020-06-12 16:04:03 -04:00
JulioV 8fbafcbe0c Fix location bug and improve fused resampling 2020-06-11 12:25:49 -04:00
Meng Li 0115fd14f6 Refactor fitbit step features 2020-06-05 21:29:39 -04:00
Meng Li adb170c3fa Fix step feature extraction input bug 2020-06-04 14:40:32 -04:00
JulioV 53db3fbaac
Fix bug so download_dataset receives the right fitbit table name 2020-06-01 18:54:19 -04:00
kaguillera 7f6448c431 Add Travis CI 2020-05-18 19:24:34 -04:00
Meng Li 34ffe4abaf Add the rule to merge population model results 2020-05-15 18:49:14 -04:00
Meng Li 8df8a5c2b3 Add baseline 2020-05-15 18:45:45 -04:00
Meng Li 8c8378f74a Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC 2020-05-15 18:42:03 -04:00
Meng Li 5fab99d8df Add one rule to calculate the ratio of cells with missing values for cleaned features 2020-05-15 18:25:07 -04:00
Meng Li 6e99e69f8c Save cleaned features with different data cleaning threasholds under different folders 2020-05-15 17:59:14 -04:00
Meng Li 915bdd04b1 Parse Fitbit summary and intraday data; Extract Fitbit daily features from summary data 2020-05-15 17:51:00 -04:00
JulioV c30bf4d24f
Update renv.snakefile 2020-05-06 18:00:44 -04:00
JulioV f0674122ff Replace packrat with renv 2020-05-01 19:46:04 -04:00
Meng Li 7cbb227214 Add modeling module 2020-04-29 18:53:54 -04:00
Meng Li 9ddb50ed59 Split days threshold of data cleaning into days_before_surgery and days_after_discharge 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-29 14:37:40 -04:00
Meng Li 490599c742 Implement AR features for iOS 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-20 18:05:54 -04:00
Meng Li 5696b4f6d4 Add merge module for demographic features and target 2020-04-16 14:20:16 -04:00
Meng Li eac721de84 Add demographic_features and targets module; refactor analysis code 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-16 12:38:28 -04:00
JulioV 010114c1aa Add wifi features 2020-04-13 13:24:52 -04:00
Mingze Cao 8cc93c8791 Refactor battery feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 15:06:25 -05:00
Mingze Cao 2d7d3bfccf Refactor location_barnett features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 12:20:39 -05:00
Mingze Cao c2fbc3ad7a Refactor sms feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 15:02:58 -05:00
Mingze Cao 97c83caebc Refactor fitbit_heartrate feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 14:31:43 -05:00
Mingze Cao a53ba242f8 Refactor google_activity_recognition feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:36:36 -05:00
Mingze Cao 0809001dfa Refactor light features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:02:53 -05:00
Mingze Cao f46e8c0666 Refactor applications_foreground features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 12:31:43 -05:00
Mingze Cao d1c38016de Refactor call features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:51:18 -05:00
Mingze Cao e0d19cbc1b Refactor screen features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:05:16 -05:00
Mingze Cao 3986f4e185 Refactor fitbit_step features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-03 16:03:45 -05:00
Mingze Cao 595bdd6f5b Refactor bluetooth features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-03 12:07:09 -05:00
Mingze Cao 6045df494d Modify the Accelerometer ‘Metrics’ to Accelerometer ‘Features’ 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-02 16:36:28 -05:00
Meng Li ea46df63d5 Get targets 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-03-26 17:27:23 -04:00
JulioV 0e173872df Refactor select_days_to_analyse, fix merge bugs, add clean metrics for model 2020-03-17 21:15:53 -04:00
Meng Li 7c240a9613 Select days to analyse 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-03-17 17:26:30 -04:00
JulioV 3d4c26754e Rename merge metrics for models and add filter valid sensed days 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-03-12 17:31:46 -04:00
Meng Li b23bb0e402 Add INCLUDE_ZERO_STEP_ROWS flag for step sensor 2020-03-09 15:59:51 -04:00
Meng Li aba9f13332 Add merge metrics module for analysis rules 2020-03-09 13:32:14 -04:00
JulioV 12ceb87090 Merge branch 'master' of https://github.com/carissalow/rapids 2020-03-05 10:32:46 -05:00
JulioV ccc283db16 Add day segment parameter to location barnett rule 2020-03-05 10:32:38 -05:00
Meng Li c8b7275084 Add firstuseafterTIME feature for screen sensor 2020-03-04 12:21:36 -05:00
Meng Li 85f4ec2ab6 Delete screen event features and add countepisode and episodepersensedminutes 2020-03-03 17:31:15 -05:00
JulioV c7bc430425 Add priority to download participants rule 2020-03-03 11:08:18 -05:00
JulioV 619a6e6e2b Fix screen delta extraction for iOS and Android 2020-03-02 19:26:20 -05:00
Meng Li fa9029b090 Add overall compliance heatmap for last 7 days 2020-02-25 13:27:17 -05:00
JulioV f22d1834ee Add metric filter to barnett location features 2020-02-21 10:58:35 -05:00
Meng Li 579df6325f Add date filter for download_dataset 2020-02-20 15:51:22 -05:00
Meng Li 3369a97d0e Add device_id and label to heatmaps 2020-02-20 10:16:03 -05:00
Meng Li 76888b412d Add label and dates for external files 2020-02-18 16:41:10 -05:00
JulioV 6bbc916702 Add download_participants functionality 2020-02-10 16:45:34 -05:00
Meng Li 0840235280 Add applications_foreground features 2020-02-07 11:52:55 -05:00
Meng Li 770764ec8a Add heartrate features 2020-02-07 11:35:15 -05:00
Meng Li 3d13940bd3 Fixed heatmap issue#27 2020-02-07 11:14:19 -05:00
Echhit Joshi d82fa0d217 Add Fitbit steps feature extraction 2020-01-29 16:22:53 -05:00
JulioV 4aec2c4032 Combine all fitbit sensors in one script and one rule 2020-01-16 17:20:04 -05:00
JulioV 9d00f14f7f Add category (genre) to foreground apps 2020-01-15 18:28:56 -05:00
Meng Li 34c4586e4d Add fitbit raw data and datetime 2020-01-15 17:18:10 -05:00
Meng Li ad514b5d40 Add accelerometer features 2020-01-15 14:15:24 -05:00
Meng Li 2b4e29ce6e Add light features 2020-01-14 09:51:39 -05:00
JulioV 3fbc1b5b92 Add html compliance report 2019-12-18 15:23:42 -05:00
JulioV c411f99cc6 Add clean rule and packrat snakemake file 2019-12-18 00:28:23 -05:00
JulioV cb2ee1ec82 Add switch to barnet_locations.R to use all, all except fused or resample fused locations 2019-12-09 19:15:10 -05:00
JulioV 0ba88203f4 Add resampling for fused location 2019-12-09 18:23:00 -05:00
JulioV 6a79fbe1e8 Fix bug in iOS battery (different status compared to Android) 2019-12-05 16:24:05 -05:00
Meng Li a4e39ad451 Add bin_size parameter for compliance_heatmap and screen_metrics 2019-12-05 11:07:40 -05:00
Meng Li 4390979143 Add unlocksperminute feature and remove countdiff for screen sensor 2019-12-04 16:04:37 -05:00
Meng Li 975dc80c4b Change the input of compliance_heatmap.py 2019-12-04 15:32:20 -05:00
JulioV 15a9e33728 Add phone sensed bins (sensor row count for every n min bin) 2019-12-04 11:33:25 -05:00
Meng Li c7ca35d13e Fixed issue #17 and #18 2019-12-02 11:22:50 -05:00
Echhit Joshi 80376f0c35 Add Episodes GAR Metrics 2019-11-27 18:06:31 -05:00
JulioV e6d418cd14 Add google activity recognition deltas 2019-11-27 15:53:37 -05:00
JulioV 9750353f5b Add screen deltas 2019-11-27 15:27:48 -05:00
Meng Li 71e4ab3e5c Extract screen features 2019-11-27 14:25:17 -05:00
Meng Li 99d387a7a4 Add day epochs to battery metrics and fix some of them 2019-11-25 12:53:32 -05:00
Echhit Joshi c5a0c1e0d6 Updated G_A_R features with epochs 2019-11-18 14:22:08 -05:00
JulioV e4008765d3 Make calls work with the unified log 2019-11-12 15:12:43 -05:00
JulioV bea791a106 Add unify ios and android rule and script 2019-11-12 14:57:27 -05:00
Meng Li 54d8084db6 Add battery daily features and daily consumption rate plot 2019-11-08 12:18:21 -05:00
JulioV c4291620c7 Rename call metrics R script 2019-11-06 15:43:41 -05:00
JulioV cf9de4dedd Refactor sms metrics to produce a single file 2019-11-06 15:38:08 -05:00
JulioV 1d1c8e6bf1 Refactor call features to produce a single file 2019-11-06 14:47:33 -05:00
JulioV 79e126bc92 Rename activity recognition rule and script and update conda env 2019-11-06 14:46:23 -05:00
JulioV 9d397a7c71 Merge branch 'master' of https://github.com/JulioV/moshi-aware 2019-11-06 14:26:59 -05:00
Echhit Joshi bdbb1904c2 Add google activity recognition features 2019-11-06 13:34:47 -05:00
JulioV 09ed38d0e7 Change barnett location features file name 2019-11-06 12:32:35 -05:00
JulioV 911e183c26 Add bluetooth features 2019-11-06 12:19:30 -05:00
JulioV 13a6537b14 Add Barnett's location features 2019-11-05 15:17:20 -05:00
JulioV cca1633728 Add valid sensed days 2019-11-05 12:34:22 -05:00
JulioV 8030624e0a Add battery deltas 2019-11-05 10:47:55 -05:00
Meng Li c177b393b9 Refactor row heatmap and add all sensors compliance 2019-11-01 14:26:51 -04:00
Meng Li eb1a307dc4 Merge branch 'master' of https://github.com/JulioV/moshi-aware 2019-10-25 11:15:49 -04:00
Meng Li 1952098888 Add row count heatmap 2019-10-25 11:12:55 -04:00
JulioV 6287afcb4c Add call features 2019-10-25 10:21:09 -04:00
JulioV 202b881f34 Modularise config for download and readable datetime rules 2019-10-24 17:27:00 -04:00
JulioV ca5e8b6a34 Add communication sms metrics 2019-10-24 16:27:43 -04:00
JulioV 2fdf23e0af Add readable time script 2019-10-24 16:08:05 -04:00
JulioV 1b1799f9d8 Added dataset download rule 2019-10-24 12:11:24 -04:00