f62a1302dd
Cr-features corrections for ACC and TEMP sensors
2022-05-09 11:01:52 +00:00
5638367999
Implementation of the second order features.
2022-04-25 13:07:03 +00:00
66451160e9
Calculating HRV features with IBI.csv.
2022-04-20 10:44:51 +00:00
8c8fe1fec7
Modifications, mostly imports, after changes in cr-features module.
2022-04-19 13:24:46 +00:00
075c64d1e5
HRV: changed wrapper calcFeat method with specialized one.
2022-04-14 11:51:53 +00:00
3c058e4463
Add option to calculate features within windows and store it in CSV (all sensors).
2022-04-13 13:18:23 +00:00
11c64cfc1a
Include all participants again.
2022-04-12 17:20:19 +02:00
74cf4ada1c
Cr-feat window length for all empaticas sensors.
2022-04-12 14:00:44 +00:00
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
2022-04-08 15:42:04 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
2022-04-06 17:47:03 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
1c42347b9b
Small changes.
2022-04-04 12:19:33 +00:00
c050174ca3
Various minimal changes.
2022-03-31 09:16:00 +00:00
a357138f6e
Added CF for HRV and shortened test data
2022-03-30 15:01:24 +00:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
ab0b9227d7
Added ACC calculated features and shorter version of ACC data.
2022-03-29 09:41:51 +00:00
8b76c96e47
Cleaning existing CF mains' and preparing src script for ACC.
2022-03-28 14:18:29 +00:00
393dab72f5
Added components for the temperature features extraction.
2022-03-28 12:37:02 +00:00
191e53e543
Added cf provider for EDA feature processing.
2022-03-23 15:13:53 +00:00
d3a3f01f29
Preparation for the EDA features integration from CF.
2022-03-22 15:36:52 +00:00
2da0911d4c
Skeleton file main.py for EDA CalcFt. integration.
2022-03-22 12:48:43 +00:00
916bb21a53
Merge branch 'labels' into run_test_participant
2022-03-16 18:56:00 +01:00
c6144f8403
Reverse JCQ items.
2022-03-16 18:55:46 +01:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
155395512c
Merge branch 'labels' into run_test_participant
2022-03-16 17:09:53 +01:00
3f8e1cc252
Empatica features calculations with an example ZIP
2022-03-16 15:03:32 +00:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
dc2b462145
Reseting files to defaults - for Minimal Working Example
2022-03-16 13:30:19 +00:00
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
b09522a8af
Merge branch 'labels' into run_test_participant
2022-03-09 17:58:44 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
a159ca3d3a
Merge branch 'labels' into run_test_participant
2022-03-08 15:43:42 +01:00
2bef86b1da
Add a format for ESM and add to config.
2022-03-08 15:43:25 +01:00
ba7c3e620b
Merge branch 'master' into run_test_participant
2022-03-01 12:03:14 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
70e077f6ab
Merge branch 'master' into run_test_participant
2022-03-01 11:40:17 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
43e5ac7918
Merge branch 'master' into run_test_participant
2022-02-23 18:06:07 +01:00
07da6be398
Add age, gender, and language as features.
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Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
c801f66533
Retain a single participant ID.
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Do not plot heatmaps as this is bugged.
2022-02-23 11:10:54 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
1efb8e3112
Clean features across participants.
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Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
2fb068cb8b
Do not calculate accelerometer features.
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Add data cleaning.
2022-01-07 12:20:51 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
15653b6e70
Add forgotten line for hashed app names in config.
2021-12-15 17:26:54 +01:00
4485c4c95e
Delete columns we don't have.
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Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
633384c6a9
Use all available sensors for PHONE_YIELD.
2021-12-08 19:04:19 +01:00
8e2222f307
Bring back deleted lines which are required.
2021-12-08 18:59:10 +01:00
712ff74898
Set table names and calculate all relevant features.
2021-12-08 18:37:34 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
2b52f686b3
Define daily segments.
2021-12-08 18:20:22 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
4829b155d5
Make config changes for minimal workflow.
2021-11-17 18:53:44 +01:00
7f4683e0fe
Feature/screen default maxlength ( #164 )
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Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
2021-10-14 09:26:06 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
e1cfcd46e4
Update example workflow for app episode features
2021-07-01 18:08:33 -04:00
065a926a87
Change own to custom categories name
2021-07-01 16:20:16 -04:00
e74c745f86
Add own categories to app foreground features
2021-07-01 16:20:16 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
5e451f99b0
Added phone keyboard features including docs/tests ( #134 )
2021-05-21 11:45:27 -04:00
809845143f
Test & fix bugs of sleep intraday features
2021-04-27 14:40:14 -04:00
66d9a9d640
Update params & docs of sleep features
2021-04-27 14:33:19 -04:00
1fa9481933
Rlease v1.1.0
2021-04-20 15:14:29 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
636b64c61a
Revert "Added more keyboard features."
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This reverts commit 94c72e3172
2021-04-05 11:25:00 -04:00
94c72e3172
Added more keyboard features.
2021-04-01 20:54:13 -04:00
e177aa6386
Update create participant files section
2021-03-25 11:39:31 -04:00
a5eb535126
Update visualizations docs & add time flag for heatmap of overall data yield
2021-03-23 21:40:55 -04:00
c7e834d654
Update default value for DBSCAN_EPS
2021-03-19 12:04:12 -04:00
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
42cee67664
Add aware_influxdb in beta
2021-03-14 13:33:43 -04:00
3ee8199574
Update docs
2021-03-14 11:42:29 -04:00
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
8e9a3bf4c5
Update location accuracy default
2021-03-12 17:18:08 -05:00
6e898beca5
Add aware_csv
2021-03-11 19:32:11 -05:00
1b8453bec4
Remove unused params from config.yaml
2021-03-11 14:57:34 -05:00
13174b0c2a
Fix a bug when fitbit data is empty
2021-03-11 14:51:16 -05:00
2ee45995f2
Update config docs and create participant files script
2021-03-11 14:40:33 -05:00
a79997e0ac
Add empatica_zip docs
2021-03-11 14:39:26 -05:00
d48194fc07
Add fitbitparsed_csv
2021-03-11 14:39:26 -05:00
b97b70e3a1
Add fitbitjson_csv
2021-03-11 14:39:26 -05:00
470f4276af
Add fitbitparsed_mysql
2021-03-11 14:39:26 -05:00
1b0ee4bbf0
Add sleep intraday to fitbitjson_mysql
2021-03-11 14:39:20 -05:00
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
cf0afeb08d
Update docs & links in config.yaml
2021-03-11 14:37:22 -05:00
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
Primoz
=
junos
Meng Li
JulioV
kirtirajk
Nikunj Goel