Bring back deleted lines which are required.
junos
parent
712ff74898
commit
8e2222f307
163
config.yaml
163
config.yaml
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@ -34,6 +34,9 @@ TIMEZONE:
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TZCODES_FILE: data/external/multiple_timezones.csv
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IF_MISSING_TZCODE: USE_DEFAULT
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DEFAULT_TZCODE: Europe/Ljubljana
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FITBIT:
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ALLOW_MULTIPLE_TZ_PER_DEVICE: False
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INFER_FROM_SMARTPHONE_TZ: False
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########################################################################################################################
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# PHONE #
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@ -91,6 +94,16 @@ PHONE_ACTIVITY_RECOGNITION:
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VEHICLE: ["in_vehicle"]
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SRC_SCRIPT: src/features/phone_activity_recognition/rapids/main.py
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# See https://www.rapids.science/latest/features/phone-applications-crashes/
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PHONE_APPLICATIONS_CRASHES:
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CONTAINER: applications_crashes
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APPLICATION_CATEGORIES:
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CATALOGUE_SOURCE: FILE # FILE (genres are read from CATALOGUE_FILE) or GOOGLE (genres are scrapped from the Play Store)
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CATALOGUE_FILE: "data/external/stachl_application_genre_catalogue.csv"
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UPDATE_CATALOGUE_FILE: False # if CATALOGUE_SOURCE is equal to FILE, whether or not to update CATALOGUE_FILE, if CATALOGUE_SOURCE is equal to GOOGLE all scraped genres will be saved to CATALOGUE_FILE
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SCRAPE_MISSING_CATEGORIES: False # whether or not to scrape missing genres, only effective if CATALOGUE_SOURCE is equal to FILE. If CATALOGUE_SOURCE is equal to GOOGLE, all genres are scraped anyway
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PROVIDERS: # None implemented yet but this sensor can be used in PHONE_DATA_YIELD
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# See https://www.rapids.science/latest/features/phone-applications-foreground/
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PHONE_APPLICATIONS_FOREGROUND:
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CONTAINER: applications
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@ -208,6 +221,15 @@ PHONE_DATA_YIELD:
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1, minimum percentage of valid minutes in an hour to be considered valid.
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SRC_SCRIPT: src/features/phone_data_yield/rapids/main.R
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# See https://www.rapids.science/latest/features/phone-keyboard/
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PHONE_KEYBOARD:
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CONTAINER: keyboard
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: ["sessioncount","averageinterkeydelay","averagesessionlength","changeintextlengthlessthanminusone","changeintextlengthequaltominusone","changeintextlengthequaltoone","changeintextlengthmorethanone","maxtextlength","lastmessagelength","totalkeyboardtouches"]
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SRC_SCRIPT: src/features/phone_keyboard/rapids/main.py
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# See https://www.rapids.science/latest/features/phone-light/
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PHONE_LIGHT:
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CONTAINER: light
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@ -299,6 +321,147 @@ PHONE_WIFI_VISIBLE:
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SRC_SCRIPT: src/features/phone_wifi_visible/rapids/main.R
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########################################################################################################################
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# FITBIT #
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########################################################################################################################
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# See https://www.rapids.science/latest/setup/configuration/#data-stream-configuration
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FITBIT_DATA_STREAMS:
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USE: fitbitjson_mysql
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# AVAILABLE:
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fitbitjson_mysql:
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DATABASE_GROUP: MY_GROUP
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SLEEP_SUMMARY_LAST_NIGHT_END: 660 # a number ranged from 0 (midnight) to 1439 (23:59) which denotes number of minutes after midnight. By default, 660 (11:00).
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fitbitparsed_mysql:
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DATABASE_GROUP: MY_GROUP
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SLEEP_SUMMARY_LAST_NIGHT_END: 660 # a number ranged from 0 (midnight) to 1439 (23:59) which denotes number of minutes after midnight. By default, 660 (11:00).
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fitbitjson_csv:
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FOLDER: data/external/fitbit_csv
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SLEEP_SUMMARY_LAST_NIGHT_END: 660 # a number ranged from 0 (midnight) to 1439 (23:59) which denotes number of minutes after midnight. By default, 660 (11:00).
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fitbitparsed_csv:
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FOLDER: data/external/fitbit_csv
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SLEEP_SUMMARY_LAST_NIGHT_END: 660 # a number ranged from 0 (midnight) to 1439 (23:59) which denotes number of minutes after midnight. By default, 660 (11:00).
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# Sensors ------
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# See https://www.rapids.science/latest/features/fitbit-calories-intraday/
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FITBIT_CALORIES_INTRADAY:
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CONTAINER: fitbit_data
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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EPISODE_TYPE: [sedentary, lightlyactive, fairlyactive, veryactive, mvpa, lowmet, highmet]
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EPISODE_TIME_THRESHOLD: 5 # minutes
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EPISODE_MET_THRESHOLD: 3
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EPISODE_MVPA_CATEGORIES: [fairlyactive, veryactive]
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EPISODE_REFERENCE_TIME: MIDNIGHT # or START_OF_THE_SEGMENT
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FEATURES: [count, sumduration, avgduration, minduration, maxduration, stdduration, starttimefirst, endtimefirst, starttimelast, endtimelast, starttimelongest, endtimelongest, summet, avgmet, maxmet, minmet, stdmet, sumcalories, avgcalories, maxcalories, mincalories, stdcalories]
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SRC_SCRIPT: src/features/fitbit_calories_intraday/rapids/main.R
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# See https://www.rapids.science/latest/features/fitbit-data-yield/
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FITBIT_DATA_YIELD:
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SENSOR: FITBIT_HEARTRATE_INTRADAY
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: [ratiovalidyieldedminutes, ratiovalidyieldedhours]
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MINUTE_RATIO_THRESHOLD_FOR_VALID_YIELDED_HOURS: 0.5 # 0 to 1, minimum percentage of valid minutes in an hour to be considered valid.
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SRC_SCRIPT: src/features/fitbit_data_yield/rapids/main.R
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# See https://www.rapids.science/latest/features/fitbit-heartrate-summary/
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FITBIT_HEARTRATE_SUMMARY:
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CONTAINER: heartrate_summary
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: ["maxrestinghr", "minrestinghr", "avgrestinghr", "medianrestinghr", "moderestinghr", "stdrestinghr", "diffmaxmoderestinghr", "diffminmoderestinghr", "entropyrestinghr"] # calories features' accuracy depend on the accuracy of the participants fitbit profile (e.g. height, weight) use these with care: ["sumcaloriesoutofrange", "maxcaloriesoutofrange", "mincaloriesoutofrange", "avgcaloriesoutofrange", "mediancaloriesoutofrange", "stdcaloriesoutofrange", "entropycaloriesoutofrange", "sumcaloriesfatburn", "maxcaloriesfatburn", "mincaloriesfatburn", "avgcaloriesfatburn", "mediancaloriesfatburn", "stdcaloriesfatburn", "entropycaloriesfatburn", "sumcaloriescardio", "maxcaloriescardio", "mincaloriescardio", "avgcaloriescardio", "mediancaloriescardio", "stdcaloriescardio", "entropycaloriescardio", "sumcaloriespeak", "maxcaloriespeak", "mincaloriespeak", "avgcaloriespeak", "mediancaloriespeak", "stdcaloriespeak", "entropycaloriespeak"]
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SRC_SCRIPT: src/features/fitbit_heartrate_summary/rapids/main.py
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# See https://www.rapids.science/latest/features/fitbit-heartrate-intraday/
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FITBIT_HEARTRATE_INTRADAY:
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CONTAINER: heartrate_intraday
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "minutesonoutofrangezone", "minutesonfatburnzone", "minutesoncardiozone", "minutesonpeakzone"]
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SRC_SCRIPT: src/features/fitbit_heartrate_intraday/rapids/main.py
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# See https://www.rapids.science/latest/features/fitbit-sleep-summary/
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FITBIT_SLEEP_SUMMARY:
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CONTAINER: sleep_summary
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: ["firstwaketime", "lastwaketime", "firstbedtime", "lastbedtime", "countepisode", "avgefficiency", "sumdurationafterwakeup", "sumdurationasleep", "sumdurationawake", "sumdurationtofallasleep", "sumdurationinbed", "avgdurationafterwakeup", "avgdurationasleep", "avgdurationawake", "avgdurationtofallasleep", "avgdurationinbed"]
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SLEEP_TYPES: ["main", "nap", "all"]
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SRC_SCRIPT: src/features/fitbit_sleep_summary/rapids/main.py
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# See https://www.rapids.science/latest/features/fitbit-sleep-intraday/
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FITBIT_SLEEP_INTRADAY:
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CONTAINER: sleep_intraday
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES:
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LEVELS_AND_TYPES: [countepisode, sumduration, maxduration, minduration, avgduration, medianduration, stdduration]
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RATIOS_TYPE: [count, duration]
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RATIOS_SCOPE: [ACROSS_LEVELS, ACROSS_TYPES, WITHIN_LEVELS, WITHIN_TYPES]
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SLEEP_LEVELS:
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INCLUDE_ALL_GROUPS: True
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CLASSIC: [awake, restless, asleep]
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STAGES: [wake, deep, light, rem]
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UNIFIED: [awake, asleep]
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SLEEP_TYPES: [main, nap, all]
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SRC_SCRIPT: src/features/fitbit_sleep_intraday/rapids/main.py
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PRICE:
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COMPUTE: False
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FEATURES: [avgduration, avgratioduration, avgstarttimeofepisodemain, avgendtimeofepisodemain, avgmidpointofepisodemain, stdstarttimeofepisodemain, stdendtimeofepisodemain, stdmidpointofepisodemain, socialjetlag, rmssdmeanstarttimeofepisodemain, rmssdmeanendtimeofepisodemain, rmssdmeanmidpointofepisodemain, rmssdmedianstarttimeofepisodemain, rmssdmedianendtimeofepisodemain, rmssdmedianmidpointofepisodemain]
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SLEEP_LEVELS:
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INCLUDE_ALL_GROUPS: True
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CLASSIC: [awake, restless, asleep]
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STAGES: [wake, deep, light, rem]
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UNIFIED: [awake, asleep]
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DAY_TYPES: [WEEKEND, WEEK, ALL]
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LAST_NIGHT_END: 660 # number of minutes after midnight (11:00) 11*60
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SRC_SCRIPT: src/features/fitbit_sleep_intraday/price/main.py
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# See https://www.rapids.science/latest/features/fitbit-steps-summary/
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FITBIT_STEPS_SUMMARY:
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CONTAINER: steps_summary
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES: ["maxsumsteps", "minsumsteps", "avgsumsteps", "mediansumsteps", "stdsumsteps"]
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SRC_SCRIPT: src/features/fitbit_steps_summary/rapids/main.py
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# See https://www.rapids.science/latest/features/fitbit-steps-intraday/
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FITBIT_STEPS_INTRADAY:
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CONTAINER: steps_intraday
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EXCLUDE_SLEEP: # you can exclude step data that was logged during sleep periods
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TIME_BASED:
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EXCLUDE: False
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START_TIME: "23:00"
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END_TIME: "07:00"
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FITBIT_BASED:
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EXCLUDE: False
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PROVIDERS:
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RAPIDS:
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COMPUTE: False
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FEATURES:
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STEPS: ["sum", "max", "min", "avg", "std"]
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SEDENTARY_BOUT: ["countepisode", "sumduration", "maxduration", "minduration", "avgduration", "stdduration"]
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ACTIVE_BOUT: ["countepisode", "sumduration", "maxduration", "minduration", "avgduration", "stdduration"]
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THRESHOLD_ACTIVE_BOUT: 10 # steps
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INCLUDE_ZERO_STEP_ROWS: False
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SRC_SCRIPT: src/features/fitbit_steps_intraday/rapids/main.py
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########################################################################################################################
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# EMPATICA #
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########################################################################################################################
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