Meng Li
b49dab0949
Migrate phone apps crashes sensor to new data stream
2021-03-11 14:37:22 -05:00
JulioV
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
JulioV
9a276c1c66
Add steps summary to jsonfitbit_mysql
2021-03-11 14:37:22 -05:00
Meng Li
13290cd444
Migrate phone wifi visible sensor to new data stream
2021-03-11 14:36:52 -05:00
Meng Li
d42c6e9c91
Migrate phone wifi connected sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
bd4f647d37
Migrate phone messages sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
3a65b3864d
Migrate phone locations sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
7a50a52a9d
Migrate phone light sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
0e96f39599
Migrate phone bluetooth sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
6d06d2b1eb
Update MUTATION structure code & docs for AR, Apps foreground, and battery sensors
2021-03-11 14:35:34 -05:00
JulioV
6970954358
Change MUTATION structure
2021-03-11 14:35:34 -05:00
JulioV
58ef276179
Add stream_parameters arg to phone and empatica mutation scripts
2021-03-11 14:35:34 -05:00
JulioV
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
Meng Li
f7cf316133
Migrate phone battery sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
824523e32c
Migrate phone apps foreground sensor to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
6b13c80e40
Fix bug while checking OS in stream_schema
2021-03-11 14:35:34 -05:00
JulioV
8c79cfc56f
Fix OS specific dependcies
2021-03-11 14:35:34 -05:00
JulioV
7372fca0dd
Fix bug when sensor is not available for an OS
2021-03-11 14:35:34 -05:00
JulioV
41711fcdb7
Rename download_data add support for py containers
2021-03-11 14:35:34 -05:00
JulioV
4b33ee43ba
Replace .env with credentials.yaml
2021-03-11 14:35:34 -05:00
JulioV
f65e3c8b1a
Migrate empatica sensors to new data stream
2021-03-11 14:35:34 -05:00
Meng Li
2eae84ff05
Add docs of AR & conversation sensors
2021-03-11 14:35:34 -05:00
JulioV
fb054b539f
Add support for multiple time zones
2021-03-11 14:35:34 -05:00
JulioV
6c51c6c239
Move phone_conversation to aware_mysql stream
2021-03-11 14:35:34 -05:00
JulioV
ab1a3dbf79
Move phone_activity_recognition to aware_mysql stream
2021-03-11 14:35:34 -05:00
JulioV
dc11cb593d
Add support for smartphone sources and schemas.
...
Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
2021-03-11 14:35:33 -05:00
Meng Li
aac87311e8
Update socialjetlag feature of sleep intraday: replace bedtime with midpoint sleep
2021-03-04 15:49:25 -05:00
Meng Li
7b4598357d
Update the PRICE provider's example in sleep intraday docs
2021-02-26 17:47:01 -05:00
Meng Li
716ff3c592
Fix PRICE provider's bug when input is an empty dataframe
2021-02-26 17:47:01 -05:00
Meng Li
d74196cab4
Add sleep intraday features with PRICE provider
2021-02-26 17:47:01 -05:00
Meng Li
bedf7106e5
Fix sleep episodes bug
2021-02-26 17:47:01 -05:00
Meng Li
8377c12efb
Add sleep intraday features with RAPIDS provider
2021-02-26 17:47:01 -05:00
JulioV
724027e383
Small fixes to timeathome docs, add config validation
2021-02-24 17:49:22 -05:00
nikunjgoel95
3d6caea6c4
Added the timeathome feature using infer_home_location.py as interim file.
2021-02-24 16:57:25 -05:00
JulioV
9668dfac7a
Update docs to support Empatica
2021-02-21 17:32:41 -05:00
JulioV
faefca8b9a
Fix extra index column when dataset is empty
2021-02-21 17:32:41 -05:00
JulioV
2e46f56111
Empatica zips must be placed in pid folder and small fixes
2021-02-21 17:32:41 -05:00
Joe Kim
a26a44819a
Add stats features for empatica bvp, eda, ibi, temp
...
Fix Snakefile file indentention
2021-02-21 17:32:41 -05:00
Joe Kim
4469cfd6bb
add stats features for bvp, eda, ibi, temp
2021-02-21 17:32:41 -05:00
JulioV
c6dc7e675a
Add stats features for empatica heartrate
...
Turn off all empatica compute features
2021-02-21 17:32:41 -05:00
JulioV
3bb0230bac
Add statistic features for empatica accelerometer
2021-02-21 17:32:41 -05:00
Juseong Kim
5f5f19866f
implement extract_empatica_data script
...
add support for all data types
Fix name comparison of zipped files
2021-02-21 17:32:41 -05:00
JulioV
4b9857562b
Add support for zip input files
2021-02-21 17:32:41 -05:00
JulioV
8c726f5d4f
Start empatica support
2021-02-21 17:32:41 -05:00
JulioV
d8813e2d04
Fix bug when any of the rows from any sensor do not belong a time segment
2021-02-09 14:51:54 -05:00
Meng Li
b67f990816
Add new `FITBIT_DATA_YIELD` `RAPIDS` provider
2021-02-02 18:30:21 -05:00
nikunjgoel95
9b248c449d
Fixing and adding MAXIMUM_ROW_DURATION.
2021-02-02 11:38:13 -05:00
nikunjgoel95
e7fc8f44f2
Removing Sampling Frequency and fixing ROG, location entropy and normalized location entropy.
2021-02-02 11:38:08 -05:00
nikunjgoel95
0bbf15f52e
Fixed the features dependent on time duration.
2021-02-02 11:36:14 -05:00
Meng Li
3d0d062491
Fix HR summary bug: do not consider rows with restinghr=0
2021-02-01 17:29:30 -05:00
Meng Li
f83c5a585e
Fix HR intraday bug: minutesonZONE features are 0
2021-02-01 13:57:12 -05:00
JulioV
aefc794274
Fix location processing when certain columns don't exist
2021-02-01 11:49:22 -05:00
abhineethreddyk
dbf57f43f3
Updated battery feature and its testing for periodic
2021-01-31 20:24:43 -05:00
Meng Li
25a3492eba
Drop rows without "assigned_segments" column before feature extraction
2021-01-21 19:41:17 -05:00
Meng Li
797de54b34
Fix merge bug of fetch_provider_features() function
2021-01-21 14:58:31 -05:00
Meng Li
5f60aac5c8
Fix KeyError bug of parsing steps data
2021-01-20 11:26:28 -05:00
JulioV
d0fe4d4c28
Add ALL_RESAMPLED flag and accuracy limit
2021-01-14 14:34:25 -05:00
JulioV
38fadbf202
Feature/doryab location clustering ( #111 )
...
* Added OPTICS - lightweight clustering algorithm.
* Changed the error message for inconsistent parameters in CONFIG
* Removing hardcoded values and changing default EPS value in the clustering algorithm.
* Added Observation in Doryab Feature docs.
Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-14 14:22:51 -05:00
JulioV
b7ba3c6407
Feature/location doryab fix ( #109 )
...
* Fixing the doryab location features for context of clustering.
* Fixed the wrong shifting while calculating the distance.
* Refractoring the haversine function
* Removed comments.
* Cleaning parts of the code.
* Updated the documentation for CLUSTER_ON parameter.
Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-07 16:20:46 -05:00
JulioV
4926497ae2
Fix bugs in Fitbit data parsing
...
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
2021-01-06 11:43:01 -05:00
JulioV
5203aa60d1
Fix bugs in create participants files script
...
- The PHONE and FITBIT flags were mixed up
- The start/end dates from the CSV file weren't being parsed correctly
2021-01-06 11:14:15 -05:00
JulioV
3a80f93771
Fix segment error when device ids is empty
2021-01-06 11:12:10 -05:00
JulioV
51c7739bfc
Revert "Start support for phone_keyboard"
...
This reverts commit dd95b4f941
.
2020-12-20 16:29:40 -05:00
JulioV
dd95b4f941
Start support for phone_keyboard
2020-12-14 13:42:22 -05:00
JulioV
63202c62cc
Fix BT doryab bug and update change log
2020-12-12 17:11:48 -05:00
JulioV
05627296f4
Fix filter_data_by_segment bug
2020-12-12 17:10:59 -05:00
JulioV
5bd1bfe856
Add new bluetooth doryab features and deprecate rapids provider
2020-12-12 17:01:46 -05:00
JulioV
266dd28d02
Add bluetooth doryab features
2020-12-11 12:03:22 -05:00
JulioV
ae21c076cd
Fix conversation data bug
2020-12-04 15:23:08 -05:00
JulioV
9a02e93b25
Swap RMySQL for RMariaDB
2020-12-04 14:57:13 -05:00
Meng Li
9a0e57301b
Update 4 plots for time_segments
2020-12-03 21:00:32 -05:00
JulioV
614e759551
Refactor day segments to time segments
2020-12-02 18:41:03 -05:00
JulioV
c24cba8679
Event segments' device id can be one of any assigned to a participant
2020-12-02 17:17:55 -05:00
Meng Li
0bd43c139c
Update plot#1: histogram_phone_data_yield
2020-12-01 14:21:33 -05:00
Meng Li
016bdbfe8c
Update Python feature scripts to add sensor and provider names automatically
2020-11-30 14:42:19 -05:00
Meng Li
70991d6667
Add dates filter while parsing fitbit data
2020-11-30 12:34:14 -05:00
Meng Li
5178be585d
Rename modeling.py to modelling.py & Update example_config.yaml
2020-11-25 22:35:38 -05:00
JulioV
5f51c94ac6
Separate device data configuration and update docs
2020-11-25 19:42:11 -05:00
Meng Li
b4a512faf3
Add analysis example workflow
2020-11-25 16:34:05 -05:00
JulioV
ced3305ddb
Update R feature scripts to add sensor and provider names automatically
2020-11-25 14:49:42 -05:00
JulioV
f02ca2624d
Add phone yield sensor
2020-11-24 19:12:16 -05:00
JulioV
555811211d
Fix column check in day segment compute
2020-11-24 14:51:06 -05:00
Meng Li
767e838c87
Fix HR&Sleep bugs
2020-11-24 13:43:24 -05:00
Meng Li
deba6b9e4f
Update sleep summary features for segments
2020-11-23 12:01:00 -05:00
Meng Li
10384204a1
Update Fitbit HR feature name
2020-11-20 11:31:16 -05:00
Meng Li
d3241c79f1
Update filter_data_by_segment() function: call chunk_episodes() inside the filter function
2020-11-19 17:27:53 -05:00
JulioV
895b70719e
Update minimal example and fix create participants bug
2020-11-17 17:27:48 -05:00
Meng Li
a71efd6b85
Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY
2020-11-11 21:16:48 -05:00
Meng Li
9fc36f67e2
Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY
2020-11-11 17:27:46 -05:00
Meng Li
39632c66f5
Update steps features for segments
2020-10-30 18:57:04 -04:00
JulioV
7f7eac0769
Merge branch 'ds2' into day_segments
2020-10-28 17:53:00 -04:00
JulioV
c5197b6c5f
Merge branch 'master' into ds2
2020-10-28 17:50:37 -04:00
Meng Li
93055dacee
Update HR main.py
2020-10-28 17:02:21 -04:00
JulioV
f36a7052b3
Add config update file to create participants file
2020-10-28 14:11:41 -04:00
Meng Li
84068ab33c
Update fitbit_parse_steps.py: add summary data
2020-10-28 13:07:35 -04:00
Meng Li
ed7585c2bf
Update heartrate features for segments
2020-10-27 17:55:57 -04:00