Commit Graph

445 Commits (imputation_and_cleaning)

Author SHA1 Message Date
Meng Li c82f5952e6 Add Docs of fitbit sleep intraday features with PRICE provider 2021-02-26 17:47:01 -05:00
Meng Li 8377c12efb Add sleep intraday features with RAPIDS provider 2021-02-26 17:47:01 -05:00
JulioV f565ac8a11 Review doc changes 2021-02-26 17:47:01 -05:00
Meng Li d0c0f876f4 Add docs of Fitbit sleep intraday features 2021-02-26 17:47:01 -05:00
Weiyu edf741306a added raw data for battery testing to test05 and test06
Validation for phone battery feature (test 3,4,5,6)

Added test case for battery status 3 in iOS device

Set all battery level with battery status 4 to the same with the previous one, so they have no change on battery level

Marked phone battery frequency as availiable
2021-02-25 13:45:25 -05:00
JulioV aa429bef64 Update git flow to add new features 2021-02-25 13:41:55 -05:00
JulioV 724027e383 Small fixes to timeathome docs, add config validation 2021-02-24 17:49:22 -05:00
nikunjgoel95 3d6caea6c4 Added the timeathome feature using infer_home_location.py as interim file. 2021-02-24 16:57:25 -05:00
JulioV 1870f513a6 Remove unsused pngs 2021-02-23 16:27:46 -05:00
JulioV d73bfdde1f Add `config.yaml` validation documentation. 2021-02-23 16:22:14 -05:00
Weiyu 1a9bcf8e37 Initial documentary for configuration schema 2021-02-23 11:07:51 -05:00
JulioV 12fffb9c63 Set TZDIR on M1 only, update installation for M1s 2021-02-21 18:23:12 -05:00
JulioV 9668dfac7a Update docs to support Empatica 2021-02-21 17:32:41 -05:00
abhineethreddyk 407ef14925 Updated test cases docs with active tests table 2021-02-16 19:08:32 -05:00
JulioV d8813e2d04 Fix bug when any of the rows from any sensor do not belong a time segment 2021-02-09 14:51:54 -05:00
JulioV 47bd695249 Deprecate Doryab circadian movement feature until it is fixed 2021-02-03 09:46:29 -05:00
Meng Li 6e59452c34 Update mkdocs.yml and add-new-features.md 2021-02-02 18:50:20 -05:00
Meng Li b67f990816 Add new `FITBIT_DATA_YIELD` `RAPIDS` provider 2021-02-02 18:30:21 -05:00
JulioV ec1c211599 Update change log for v0.4.2 so far 2021-02-02 12:05:01 -05:00
nikunjgoel95 9b248c449d Fixing and adding MAXIMUM_ROW_DURATION. 2021-02-02 11:38:13 -05:00
nikunjgoel95 e7fc8f44f2 Removing Sampling Frequency and fixing ROG, location entropy and normalized location entropy. 2021-02-02 11:38:08 -05:00
nikunjgoel95 cc2127e72d Updated documentation for Duration. 2021-02-02 11:36:48 -05:00
nikunjgoel95 4746d7ab6c Added Observation in Doryab Feature docs. 2021-02-02 11:34:56 -05:00
JulioV 1b664d9766 Update docs/faq.md 2021-02-01 16:12:57 -05:00
ThisWei777 77991d72f1 Added two FAQs
Added FAQs for Unimplemented MAX_NO_FIELD_TYPES and Running RAPIDS on Apple Silicon M1 Mac
2021-02-01 16:12:57 -05:00
JulioV 0b87aa3b36 Fix bug when no error message was displayed for an empty `[PHONE_DATA_YIELD][SENSORS]` when resampling location data 2021-01-27 17:12:53 -05:00
ThisWei777 f1118bbf63
R 4.0.3 timezone issue (#112)
* Update docs/faq.md
2021-01-27 16:35:21 -05:00
JulioV ea6894f2ff Update change log for v0.4.0 2021-01-26 13:40:45 -05:00
JulioV eb258d874a Fix minor issues in docs 2021-01-26 13:27:53 -05:00
abhineethreddyk 8ce9059e93 Updated testing docs 2021-01-20 22:40:35 -05:00
JulioV 17f3e5d598 Update nul FAQ 2021-01-14 15:25:08 -05:00
JulioV d0fe4d4c28 Add ALL_RESAMPLED flag and accuracy limit 2021-01-14 14:34:25 -05:00
JulioV 585bf7bc5d Add code so new feature providers can be added for the new four sensors 2021-01-14 14:31:40 -05:00
JulioV 8fd1d9dc29 Add four new sensors without providers 2021-01-14 14:31:40 -05:00
JulioV 38fadbf202
Feature/doryab location clustering (#111)
* Added OPTICS -  lightweight clustering algorithm.

* Changed the error message for inconsistent parameters in CONFIG

* Removing hardcoded values and changing default EPS value in the clustering algorithm.

* Added Observation in Doryab Feature docs.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-14 14:22:51 -05:00
JulioV ee2882fe2a Modified change log 2021-01-07 16:27:29 -05:00
JulioV b7ba3c6407
Feature/location doryab fix (#109)
* Fixing the doryab location features for context of clustering.

* Fixed the wrong shifting while calculating the distance.

* Refractoring the haversine function

* Removed comments.

* Cleaning parts of the code.

* Updated the documentation for CLUSTER_ON parameter.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-07 16:20:46 -05:00
JulioV 3dd0e989a7 Update Doryab location docs 2021-01-06 12:09:06 -05:00
JulioV 4926497ae2 Fix bugs in Fitbit data parsing
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
2021-01-06 11:43:01 -05:00
JulioV b343399ffa Add libglpk40 dependency
To CI tests, dockerfile and installation

Add libglpk40 to dockerfile and installation
2021-01-05 19:24:49 -05:00
JulioV aaa9ad22a2 Update changelog 2021-01-05 18:37:21 -05:00
JulioV f6e66a43f0 Clarify in DB credential configuration that we only support MySQL 2021-01-05 18:36:55 -05:00
JulioV 9418e6e936 Update docker and linux instructions to use RSPM binary repo for for faster installation 2021-01-05 18:36:19 -05:00
JulioV 2b1f3f230c v0.3.1 2020-12-21 16:30:46 -05:00
JulioV 29e3d9bf37 - Update R and Python virtual environments
- Add GH actions CI support for tests and docker
- Add release and test badges to README
2020-12-20 18:35:54 -05:00
JulioV 57d51378a3 Merge branch 'hotfix/v0.2.6' into develop 2020-12-20 17:04:08 -05:00
JulioV 67e0caa2fe Fix old versions banner on nested pages 2020-12-20 17:03:11 -05:00
JulioV d39b700b5f Update git flow docs, set keyboard flag to false 2020-12-20 13:55:41 -05:00
JulioV ac4526df5d Update docs, add renv and conda cache,& release CI 2020-12-20 13:54:31 -05:00
JulioV 9bf6042ea9 Merge branch 'hotfix/v0.2.5' into develop 2020-12-18 22:47:12 -05:00
JulioV d352b2c607 Fix docs deploy typo 2020-12-18 22:46:30 -05:00
JulioV 9e8178edbd Merge branch 'hotfix/v0.2.4' into develop 2020-12-18 22:36:25 -05:00
JulioV 265163d228 Fix broken links in landing page and docs deploy 2020-12-18 22:35:10 -05:00
JulioV 079547e60d Update virtual envs 2020-12-18 14:06:28 -05:00
JulioV 1b65f11b89 Fix participant IDS in the example analysis workflow 2020-12-18 11:27:04 -05:00
JulioV 7f4294d016 Fix readme link to docs 2020-12-12 17:51:01 -05:00
JulioV 3867f9c0d8 Fix old version banner 2020-12-12 17:36:15 -05:00
JulioV 1359acf5fd Update git flow 2020-12-12 17:13:04 -05:00
JulioV 63202c62cc Fix BT doryab bug and update change log 2020-12-12 17:11:48 -05:00
JulioV 5bd1bfe856 Add new bluetooth doryab features and deprecate rapids provider 2020-12-12 17:01:46 -05:00
JulioV 266dd28d02 Add bluetooth doryab features 2020-12-11 12:03:22 -05:00
JulioV 9ff75b10ba Update faq 2020-12-09 18:54:49 -05:00
JulioV a7269dab55 Fix Configuration broken link 2020-12-08 15:31:34 -05:00
JulioV e131983967 Add dev/tag triggered docs and git flow 2020-12-07 21:08:14 -05:00
Meng Li 17a3414987 Update analysis.md 2020-12-07 10:56:37 -05:00
JulioV a035b785f4 Small fixes to the analysis example 2020-12-04 16:46:06 -05:00
JulioV 73f15d44fb Update landing page 2020-12-04 16:33:55 -05:00
JulioV 621885ee86 Add change log to docs 2020-12-04 16:21:22 -05:00
JulioV fdd61521f8 Add visualization docs 2020-12-04 16:19:25 -05:00
JulioV a2a532ed81 Adjust figure width 2020-12-04 15:33:30 -05:00
JulioV 9a02e93b25 Swap RMySQL for RMariaDB 2020-12-04 14:57:13 -05:00
JulioV 5baaa94092 Update migrating docs 2020-12-03 21:04:20 -05:00
JulioV 3560217e3b Update to analysis workflow docs 2020-12-03 19:22:16 -05:00
JulioV a3330e703b Add migration docs 2020-12-03 18:57:43 -05:00
JulioV 1e9e83f2f3 Small fix minimal example 2020-12-03 15:51:59 -05:00
JulioV 7ded397378 Add analysis workflow example 2020-12-03 12:50:28 -05:00
JulioV fca0528e53 Update file structure docs 2020-12-03 11:50:54 -05:00
JulioV 258b60883c Add overnight time segment example 2020-12-02 18:49:59 -05:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
JulioV e0f43d581c Add day segment examples 2020-12-02 17:49:44 -05:00
JulioV f4aeb3bba9 Rename configuration page 2020-12-02 17:27:05 -05:00
JulioV c24cba8679 Event segments' device id can be one of any assigned to a participant 2020-12-02 17:17:55 -05:00
Meng Li 8daa5ef20e Update add-new-features.md 2020-11-30 15:43:03 -05:00
JulioV 63215b3c70 Add code of conduct 2020-11-30 13:51:05 -05:00
JulioV 5f51c94ac6 Separate device data configuration and update docs 2020-11-25 19:42:11 -05:00
JulioV c734c8b415 Update fitbit docs 2020-11-25 18:24:43 -05:00
JulioV 6562d1ef2a Update phone data yield docs 2020-11-25 17:54:00 -05:00
JulioV ced3305ddb Update R feature scripts to add sensor and provider names automatically 2020-11-25 14:49:42 -05:00
Meng Li c25467e7af Update Fitbit docs: sleep summary assumptions 2020-11-23 18:28:15 -05:00
Meng Li ba3b50f003 Update Fitbit docs: sleep summary 2020-11-23 16:52:23 -05:00
Meng Li ca8c815446 Update Fitbit docs: HR & Steps 2020-11-19 12:30:16 -05:00
JulioV 17da2ff7f2 Fix bug when banner displays even on the latest URL 2020-11-18 20:04:23 -05:00
JulioV 27564bab98 Fix banner style 2020-11-18 19:25:43 -05:00
JulioV a10c8e24aa Fix banner for old versions of the docs 2020-11-18 19:14:16 -05:00
JulioV eedbbc757c Second banner test 2020-11-18 18:41:48 -05:00
JulioV 87e6b2258a Test for old docs banner 2020-11-18 18:30:32 -05:00
JulioV 2870f39f85 Update docs 2020-11-18 12:33:26 -05:00
JulioV 895b70719e Update minimal example and fix create participants bug 2020-11-17 17:27:48 -05:00
JulioV d1296213dc Add warning 2020-11-16 19:11:13 -05:00
JulioV 77c27f6368 Fix event day segments docs 2020-11-12 17:35:57 -05:00
JulioV a94866e83d Update docs with links guidance 2020-11-09 14:27:04 -05:00
JulioV a0d5426289 Fix file structure path image 2020-11-09 14:18:05 -05:00
JulioV f9ad0c237d Links and CI updates to work with mike versioning 2020-11-09 13:34:02 -05:00
JulioV 7facbe09fe Fix menu style 2020-11-09 01:17:07 -05:00
JulioV 98eaeaaa2c Small fix installation docs 2020-11-08 16:00:34 -05:00
JulioV 0c2054e833 Add new material theme features 2020-11-08 15:08:46 -05:00
JulioV 30c505544c Add new features docs 2020-11-07 17:57:59 -05:00
JulioV 4160848ff8 Add testing docs 2020-11-06 18:06:01 -05:00
JulioV 73753f4714 Add team, remote support and v env docs 2020-11-06 17:51:56 -05:00
JulioV 65bf0e06fc Update feature introduction docs 2020-11-06 17:17:41 -05:00
JulioV b8fb94e3ea Add conversation docs 2020-11-06 16:49:17 -05:00
JulioV 65760bc02e Add screen and update absolute links 2020-11-06 16:37:38 -05:00
JulioV cfbf3a3654 Add locations docs 2020-11-06 13:03:32 -05:00
JulioV fd67d54e09 Add light docs 2020-11-05 20:56:11 -05:00
JulioV 6f0e0d0791 Add AR docs 2020-11-05 20:42:56 -05:00
JulioV 56fd081ea6 Add battery docs and fix small issues 2020-11-05 20:12:14 -05:00
JulioV 62f1bf9d6b Update docs 2020-11-05 19:43:33 -05:00
JulioV 432f11fbcb Add bluetooth, calls, sms and wifi docs 2020-11-04 19:37:24 -05:00
JulioV 2aa44fc504 Change SENSOR_DATA to DEVICE_DATA 2020-11-04 17:16:46 -05:00
JulioV 231a5d4265 Add FAQ 2020-11-04 16:41:39 -05:00
JulioV ce55cbda4a Add file structure docs 2020-11-04 14:11:46 -05:00
JulioV 1ea2730afd Update minimal workflow example docs 2020-11-04 13:27:58 -05:00
JulioV 64dd03a07d New docs using mkdocs (home and setup) 2020-10-30 15:48:05 -04:00
JulioV c5197b6c5f Merge branch 'master' into ds2 2020-10-28 17:50:37 -04:00
Meng Li 640890c7b4 Update extracted.rst: AR 2020-10-13 18:26:33 -04:00
JulioV b0cbc0a54a Fix FAQ format 2020-10-09 11:43:36 -04:00
JulioV 2d10ba255e Add 2 faq 2020-10-09 11:41:25 -04:00
JulioV 5f86d41f09 Update example analysis docs 2020-09-10 10:58:47 -04:00
JulioV 364f22f987 Update docs, remote support and doc editing 2020-09-10 09:41:47 -04:00
Meng Li fa74f4012a Update docs: add data_exploration.rst 2020-09-09 15:53:35 -04:00
JulioV ea27d46a05
Update index.rst 2020-09-09 15:19:05 -04:00
Meng Li 841891335a Update docs: visualization section (add screenshot & rules & params tables) 2020-09-09 14:31:58 -04:00
Meng Li 271803914a Update docs: add visualization section 2020-09-08 17:30:37 -04:00
Agam 8943404c14 formatting change 2020-09-02 23:56:56 -04:00
Agam f12601edfc Add Agam Kumar as a contributor to the docs 2020-09-02 23:49:03 -04:00
kaguillera 148301d468 Testing, test docs and bugfixes for conversation 2020-08-28 18:28:00 -04:00
JulioV b0f1477d7e Migrate location providers to new file structure and segments 2020-08-28 13:53:00 -04:00
nikunjgoel95 cbaf129494 Updated docs for new Energy Split in Conversation Features. 2020-08-23 18:07:38 -04:00
JulioV a480917b52
Update index.rst 2020-08-21 12:51:34 -04:00
JulioV 31fefe724b
Update introduction.rst 2020-08-21 12:44:08 -04:00
JulioV b60c2af32f
Update installation.rst 2020-08-18 12:03:13 -04:00
JulioV 56328430e3 Add code block type to example 2020-08-18 11:40:11 -04:00
JulioV b98b574c49
Update example.rst 2020-08-18 11:30:44 -04:00
JulioV 798a42103b Fix example rst 2020-08-14 18:36:40 -04:00
JulioV b1fae3d24d
Update example.rst 2020-08-14 18:07:51 -04:00
JulioV 52e1955a0e
Update example.rst 2020-08-14 17:59:05 -04:00
kaguillera f5ea5c3116 Conversation testing, testing_docs & minor bugfix 2020-08-13 18:36:38 -04:00
JulioV b448bf3a08
Update snakemake_docs.rst 2020-08-13 17:47:03 -04:00
kaguillera 1ad8bb0365 Add testing, test docs and minor fixes for AR 2020-08-13 13:41:45 -04:00
Meng Li 1b4ad9c986 Update example.rst 2020-08-12 11:30:14 -04:00
JulioV 6d50bff220 Update docker instructions 2020-08-06 20:17:51 -04:00
JulioV a77288bc76 Add docker installation 2020-08-06 18:12:37 -04:00
JulioV 81a4f23310
Update extracted.rst 2020-08-05 13:21:18 -04:00
nikunjgoel95 38b3f55ab8 Added 'sampling_frequency' in Documentation. 2020-08-05 13:14:31 -04:00
kaguillera eeeff354e6 Update AR documentation 2020-08-05 12:06:12 -04:00
Meng Li 84f9d41b4f Update example.rst: format lists 2020-08-05 09:55:04 -04:00
Meng Li d6adba337b Update example.rst 2020-08-05 09:47:29 -04:00
Meng Li 29450124f4 Update Docs: add analysis workflow example 2020-08-05 09:41:46 -04:00
JulioV a726a52525
Update installation.rst 2020-08-04 12:30:46 -04:00
kaguillera dbc51de4e3 Updated WIFI testing, bugfix and docs 2020-07-29 14:14:47 -04:00
JulioV 766c94413f Make table visible in Doryab's documentation 2020-07-24 20:26:15 -04:00
JulioV b53c075a4f Update Doryab's documentation 2020-07-24 20:22:40 -04:00
JulioV 5f771618ae Add screen episode filter parameters 2020-07-23 14:38:59 -04:00
JulioV f42753d28a
Update extracted.rst 2020-07-22 21:45:06 -04:00
JulioV fa732265c8
Update extracted.rst 2020-07-22 21:42:02 -04:00
Meng Li 4e948a931c Update PHONE_VALID_SENSED_DAYS section of extracted.rst 2020-07-22 17:56:23 -04:00
JulioV edd46f5d17 Update environment for new location features 2020-07-21 15:33:28 -04:00
nikunjgoel95 024ae1a549 Added Doryab's location features to rapids.
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-07-16 14:26:43 -04:00
kaguillera 4f256115c5 Apps_foreground, bugfixes, testing & testcase docs 2020-07-16 13:14:28 -04:00
JulioV f61bedeafe Update docs 2020-07-15 16:36:50 -04:00
JulioV aae216ff26 Update docs 2020-07-13 12:47:02 -04:00
JulioV 7d64992530 Update links to github, remove unsused files 2020-07-13 12:42:36 -04:00
Nikunj Goel 4bdc30ffa4
Update contributors.rst 2020-07-10 17:25:17 -04:00
Nikunj Goel c39e47a70f
Update contributors.rst 2020-07-10 17:24:05 -04:00
kaguillera 6d37402ee4 Added Light Bugfix, testing and testcase docs 2020-07-10 14:01:19 -04:00
JulioV d2704296f3 Refactor valid sensed bins and days 2020-07-09 13:01:50 -04:00
kaguillera 9ca54f930d WIFI Bug fix and testing 2020-07-07 17:15:32 -04:00
kaguillera f24d2876fc Fixed bluetooth bug and added feeature testing 2020-07-06 18:11:28 -04:00
kaguillera 61e86dd82b Update docs to include battery testcases 2020-07-01 18:56:15 -04:00
JulioV 379036c2b1
Update extracted.rst 2020-07-01 15:30:28 -04:00
JulioV 8453def2c9
Update introduction.rst 2020-07-01 11:30:47 -04:00
JulioV 06edf53016 Add support for multi-platform participants 2020-06-30 17:34:18 -04:00
JulioV 51dd231dc9
Update extracted.rst 2020-06-30 16:37:42 -04:00
kaguillera e8286d1487 Updated the screen tests for bug fix 2020-06-30 15:28:01 -04:00
JulioV 5a664b1c0c
Update faq.rst 2020-06-30 08:49:29 -04:00
JulioV b33a51dd76
Update faq.rst 2020-06-30 08:31:11 -04:00
Meng Li 16a086a9c8 Update step features of extracted.rst 2020-06-26 18:06:05 -04:00
kaguillera 4af14eca4b Added testing sensor with empty raw data files 2020-06-26 16:47:31 -04:00
kaguillera 533d0adab3 Updated sms sensor to messages 2020-06-26 12:20:47 -04:00
kaguillera 270eeabe3b Updated documentation. 2020-06-25 16:32:45 -04:00
JulioV 1bdb52dd65 Add functionality to exlcude step data based on sleep 2020-06-24 13:33:58 -04:00
JulioV 36017d5dca Refactor Snakefile and docs. Rename SMS scripts 2020-06-23 11:33:34 -04:00
Meng Li 7aa66b9478 Update accelerometer docs 2020-06-22 15:39:00 -04:00
Meng Li f07ba22f98 Minor fix for applications_foreground sensor 2020-06-19 16:22:57 -04:00
nikunjgoel95 1409de2832 Added Converstion Features.
Updated config.yaml, Snakefile, Features.Snakefile and documentation.
2020-06-19 01:27:28 -04:00
kaguillera 63ac81246e Minor Docs update 2020-06-16 17:32:45 -04:00
JulioV 327b43b4e9
Update installation.rst 2020-06-11 12:45:52 -04:00
JulioV 673c3c22f5
Update installation.rst 2020-06-11 12:37:07 -04:00
JulioV 5bdaf13752
Update installation.rst 2020-06-11 12:31:51 -04:00
JulioV 2dab5f5709
Update installation.rst 2020-06-11 12:29:08 -04:00