Update links to github, remove unsused files
JulioV
parent
4bdc30ffa4
commit
7d64992530
144
Makefile
144
Makefile
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@ -1,144 +0,0 @@
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.PHONY: clean data lint requirements sync_data_to_s3 sync_data_from_s3
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#################################################################################
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# GLOBALS #
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#################################################################################
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PROJECT_DIR := $(shell dirname $(realpath $(lastword $(MAKEFILE_LIST))))
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BUCKET = [OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')
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PROFILE = default
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PROJECT_NAME = moshi-aware
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PYTHON_INTERPRETER = python3
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ifeq (,$(shell which conda))
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HAS_CONDA=False
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else
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HAS_CONDA=True
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endif
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#################################################################################
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# COMMANDS #
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#################################################################################
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## Install Python Dependencies
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requirements: test_environment
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$(PYTHON_INTERPRETER) -m pip install -U pip setuptools wheel
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$(PYTHON_INTERPRETER) -m pip install -r requirements.txt
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## Make Dataset
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data: requirements
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$(PYTHON_INTERPRETER) src/data/make_dataset.py data/raw data/processed
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## Delete all compiled Python files
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clean:
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find . -type f -name "*.py[co]" -delete
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find . -type d -name "__pycache__" -delete
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## Lint using flake8
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lint:
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flake8 src
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## Upload Data to S3
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sync_data_to_s3:
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ifeq (default,$(PROFILE))
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aws s3 sync data/ s3://$(BUCKET)/data/
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else
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aws s3 sync data/ s3://$(BUCKET)/data/ --profile $(PROFILE)
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endif
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## Download Data from S3
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sync_data_from_s3:
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ifeq (default,$(PROFILE))
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aws s3 sync s3://$(BUCKET)/data/ data/
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else
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aws s3 sync s3://$(BUCKET)/data/ data/ --profile $(PROFILE)
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endif
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## Set up python interpreter environment
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create_environment:
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ifeq (True,$(HAS_CONDA))
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@echo ">>> Detected conda, creating conda environment."
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ifeq (3,$(findstring 3,$(PYTHON_INTERPRETER)))
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conda create --name $(PROJECT_NAME) python=3
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else
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conda create --name $(PROJECT_NAME) python=2.7
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endif
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@echo ">>> New conda env created. Activate with:\nsource activate $(PROJECT_NAME)"
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else
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$(PYTHON_INTERPRETER) -m pip install -q virtualenv virtualenvwrapper
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@echo ">>> Installing virtualenvwrapper if not already installed.\nMake sure the following lines are in shell startup file\n\
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export WORKON_HOME=$$HOME/.virtualenvs\nexport PROJECT_HOME=$$HOME/Devel\nsource /usr/local/bin/virtualenvwrapper.sh\n"
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@bash -c "source `which virtualenvwrapper.sh`;mkvirtualenv $(PROJECT_NAME) --python=$(PYTHON_INTERPRETER)"
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@echo ">>> New virtualenv created. Activate with:\nworkon $(PROJECT_NAME)"
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endif
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## Test python environment is setup correctly
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test_environment:
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$(PYTHON_INTERPRETER) test_environment.py
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#################################################################################
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# PROJECT RULES #
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#################################################################################
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#################################################################################
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# Self Documenting Commands #
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#################################################################################
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.DEFAULT_GOAL := help
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# Inspired by <http://marmelab.com/blog/2016/02/29/auto-documented-makefile.html>
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# sed script explained:
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# /^##/:
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# * save line in hold space
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# * purge line
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# * Loop:
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# * append newline + line to hold space
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# * go to next line
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# * if line starts with doc comment, strip comment character off and loop
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# * remove target prerequisites
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# * append hold space (+ newline) to line
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# * replace newline plus comments by `---`
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# * print line
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# Separate expressions are necessary because labels cannot be delimited by
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# semicolon; see <http://stackoverflow.com/a/11799865/1968>
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.PHONY: help
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help:
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@echo "$$(tput bold)Available rules:$$(tput sgr0)"
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@echo
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@sed -n -e "/^## / { \
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h; \
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s/.*//; \
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:doc" \
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-e "H; \
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n; \
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s/^## //; \
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t doc" \
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-e "s/:.*//; \
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G; \
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s/\\n## /---/; \
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s/\\n/ /g; \
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p; \
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}" ${MAKEFILE_LIST} \
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| LC_ALL='C' sort --ignore-case \
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| awk -F '---' \
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-v ncol=$$(tput cols) \
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-v indent=19 \
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-v col_on="$$(tput setaf 6)" \
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-v col_off="$$(tput sgr0)" \
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'{ \
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printf "%s%*s%s ", col_on, -indent, $$1, col_off; \
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n = split($$2, words, " "); \
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line_length = ncol - indent; \
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for (i = 1; i <= n; i++) { \
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line_length -= length(words[i]) + 1; \
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if (line_length <= 0) { \
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line_length = ncol - indent - length(words[i]) - 1; \
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printf "\n%*s ", -indent, " "; \
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} \
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printf "%s ", words[i]; \
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} \
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printf "\n"; \
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}' \
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| more $(shell test $(shell uname) = Darwin && echo '--no-init --raw-control-chars')
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@ -971,29 +971,29 @@ Active and sedentary bouts. If the step count per minute is smaller than ``THRES
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.. -------------------------Links ------------------------------------ ..
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.. _PHONE_VALID_SENSED_BINS: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L30
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.. _`Messages Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L43
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.. _PHONE_VALID_SENSED_BINS: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L30
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.. _`Messages Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L43
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.. _AWARE: https://awareframework.com/what-is-aware/
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.. _`List of Timezones`: https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
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.. _DAY_SEGMENTS: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L6
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.. _PHONE_VALID_SENSED_DAYS: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L37
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.. _`Call Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L53
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.. _`WiFi Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L172
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.. _`Bluetooth Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L84
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.. _`Accelerometer Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L118
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.. _`Applications Foreground Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L128
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.. _`Battery Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L98
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.. _`Activity Recognition Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L90
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.. _`Light Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L112
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.. _`Location (Barnett’s) Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L74
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.. _`Screen Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L104
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.. _`Fitbit: Sleep Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L165
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.. _DAY_SEGMENTS: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L6
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.. _PHONE_VALID_SENSED_DAYS: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L37
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.. _`Call Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L53
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.. _`WiFi Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L172
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.. _`Bluetooth Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L84
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.. _`Accelerometer Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L118
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.. _`Applications Foreground Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L128
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.. _`Battery Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L98
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.. _`Activity Recognition Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L90
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.. _`Light Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L112
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.. _`Location (Barnett’s) Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L74
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.. _`Screen Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L104
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.. _`Fitbit: Sleep Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L165
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.. _`version 1`: https://dev.fitbit.com/build/reference/web-api/sleep-v1/
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.. _`version 1.2`: https://dev.fitbit.com/build/reference/web-api/sleep/
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.. _`Conversation Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L191
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.. _`Conversation Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L191
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.. _`this Fitbit forum post`: https://community.fitbit.com/t5/Alta/What-does-Restless-mean-in-sleep-tracking/td-p/2989011
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.. _shortData: https://dev.fitbit.com/build/reference/web-api/sleep/#interpreting-the-sleep-stage-and-short-data
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.. _`Fitbit: Heart Rate Config Code`: https://github.com/carissalow/rapids/blob/0c53fd275e628819cf79cf5b87006ce1ad9e597c/config.yaml#L141
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.. _`Fitbit: Heart Rate Config Code`: https://github.com/carissalow/rapids/blob/4bdc30ffa4e13987b398a2354746d1a1977bef27/config.yaml#L141
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.. _`Fitbit: Steps Config Code`: https://github.com/carissalow/rapids/blob/29b04b0601b62379fbdb76de685f3328b8dde2a2/config.yaml#L148
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.. _`Fitbit documentation`: https://help.fitbit.com/articles/en_US/Help_article/1565
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.. _top1global: https://github.com/carissalow/rapids/blob/765bb462636d5029a05f54d4c558487e3786b90b/config.yaml#L136
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10
setup.py
10
setup.py
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from setuptools import find_packages, setup
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setup(
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name='src',
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packages=find_packages(),
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version='0.1.0',
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description='Data cleaning, feature engineering and analysis for Aware sensors',
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author='Moshi',
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license='MIT',
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)
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@ -1,25 +0,0 @@
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import sys
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REQUIRED_PYTHON = "python3"
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def main():
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system_major = sys.version_info.major
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if REQUIRED_PYTHON == "python":
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required_major = 2
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elif REQUIRED_PYTHON == "python3":
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required_major = 3
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else:
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raise ValueError("Unrecognized python interpreter: {}".format(
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REQUIRED_PYTHON))
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if system_major != required_major:
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raise TypeError(
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"This project requires Python {}. Found: Python {}".format(
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required_major, sys.version))
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else:
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print(">>> Development environment passes all tests!")
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if __name__ == '__main__':
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main()
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