48 lines
1.1 KiB
Markdown
48 lines
1.1 KiB
Markdown
# STRAW2analysis
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All analysis for the STRAW project.
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To install:
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1. Create a conda virtual environment from the `environment.yml` file.
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```shell
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cd config
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conda env create --file environment.yml
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conda activate straw2analysis
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```
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If you have already created this environment, you can update it using:
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```shell
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conda deactivate
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conda env update --file environment.yml
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conda activate straw2analysis
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```
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2. Follow [the instructions](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to set DB_PASSWORD as the environment variable.
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In short, use:
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```shell
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cd $CONDA_PREFIX
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mkdir -p ./etc/conda/activate.d
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mkdir -p ./etc/conda/deactivate.d
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touch ./etc/conda/activate.d/env_vars.sh
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touch ./etc/conda/deactivate.d/env_vars.sh
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```
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and then edit `./etc/conda/activate.d/env_vars.sh` as follows:
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```bash
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#!/bin/sh
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export DB_PASSWORD='database-password'
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```
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and `./etc/conda/deactivate.d/env_vars.sh` as follows:
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```bash
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#!/bin/sh
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unset DB_PASSWORD
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``` |