STRAW2analysis

All analysis for the STRAW project.

To install:

1. Create a conda virtual environment from the environment.yml file.

   cd config
   conda env create --file environment.yml
   conda activate straw2analysis
   

   If you have already created this environment, you can update it using:

   conda deactivate
   conda env update --file environment.yml
   conda activate straw2analysis
   

2. Follow the instructions to set DB_PASSWORD as the environment variable.

   In short, use:

   cd $CONDA_PREFIX
   mkdir -p ./etc/conda/activate.d
   mkdir -p ./etc/conda/deactivate.d
   touch ./etc/conda/activate.d/env_vars.sh
   touch ./etc/conda/deactivate.d/env_vars.sh
   

   and then edit ./etc/conda/activate.d/env_vars.sh as follows:

   #!/bin/sh
   
   export DB_PASSWORD='database-password' 
   

   and ./etc/conda/deactivate.d/env_vars.sh as follows:

   #!/bin/sh
   
   unset DB_PASSWORD