1.1 KiB
1.1 KiB
STRAW2analysis
All analysis for the STRAW project.
To install:
-
Create a conda virtual environment from the
environment.yml
file.cd config conda env create --file environment.yml conda activate straw2analysis
If you have already created this environment, you can update it using:
conda deactivate conda env update --file environment.yml conda activate straw2analysis
-
Follow the instructions to set DB_PASSWORD as the environment variable.
In short, use:
cd $CONDA_PREFIX mkdir -p ./etc/conda/activate.d mkdir -p ./etc/conda/deactivate.d touch ./etc/conda/activate.d/env_vars.sh touch ./etc/conda/deactivate.d/env_vars.sh
and then edit
./etc/conda/activate.d/env_vars.sh
as follows:#!/bin/sh export DB_PASSWORD='database-password'
and
./etc/conda/deactivate.d/env_vars.sh
as follows:#!/bin/sh unset DB_PASSWORD