Commit Graph

371 Commits (7b0c0037f715f4cd9b338a378cdfa0730e709b85)

Author SHA1 Message Date
junos 6295cc8e91 Add baseline data capabilities. 2022-02-04 18:39:32 +01:00
junos 360ec7de4b Update RAPIDS. 2022-02-04 17:20:11 +01:00
junos e177b15058 Clean features across participants.
Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
junos 832eb6137e ML with RAPIDS and missing values. 2022-01-19 12:53:03 +01:00
junos 702b091d73 Read RAPIDS features and create columns. 2022-01-07 17:00:12 +01:00
junos 257a044227 Update RAPIDS. 2022-01-07 12:22:50 +01:00
junos ae358f1e24 Various improvements of RAPIDS. 2021-12-15 20:22:22 +01:00
junos 4dee4b6fc1 Add info about updating RAPIDS. 2021-12-15 20:21:59 +01:00
junos ed3483ace4 Update RAPIDS to v1.7.1. 2021-12-15 18:35:26 +01:00
junos de10269d36 Export categories and add csv. 2021-12-15 18:26:20 +01:00
junos 7e8e922d71 Debugging of RAPIDS. 2021-12-15 18:25:53 +01:00
junos c4aacfffe1 Debug a ValueError in RAPIDS and add demo. 2021-12-15 16:03:49 +01:00
junos 2e1e771b3d Correct errors in RAPIDS config. 2021-12-09 17:34:37 +01:00
junos 54c712b1cd Further adapts RAPIDS and add graphical examples. 2021-12-08 19:20:53 +01:00
junos 375cb10c1e Adapt RAPIDS for our use case. 2021-12-08 18:39:10 +01:00
junos 689535e444 Add rules for usernames and timezones. 2021-12-01 18:22:56 +01:00
junos f5c17aa7ce Incorporate DB query for usernames into snakemake workflow. 2021-12-01 18:14:27 +01:00
junos 7d0355d095 Gather usernames from DB to create CSV. 2021-12-01 17:22:22 +01:00
junos 6eca98962f Export timezone info, too. 2021-12-01 17:08:24 +01:00
junos 0e6a18a660 Prepare data for export to CSV. 2021-12-01 16:50:43 +01:00
junos cf3801b120 Import participants' wristband info. 2021-12-01 11:55:58 +01:00
junos 578f5ed5f3 Start preparing the true usernames CSV file. 2021-12-01 11:29:22 +01:00
junos 6f9b513ba0 Make the participants rule run. 2021-11-29 18:37:50 +01:00
junos c2b27aef45 Add yaml files to submodule. 2021-11-24 19:12:36 +01:00
junos 4bb01ba871 Add functions to prepare participants files. 2021-11-24 19:09:06 +01:00
junos 080dc1d1fe Add instructions for RAPIDS. 2021-11-18 17:22:08 +01:00
junos 4e87664fd6 Force UNIX eol characters. 2021-11-17 19:20:19 +01:00
junos c0ea17dbe3 Update rapids. 2021-11-17 18:58:12 +01:00
junos 1d65a31d8c Update rapids submodule. 2021-11-17 12:59:12 +01:00
junos d4ba701202 Add the rapids fork submodule.
Reproducible Analysis Pipeline for Data Streams
2021-11-17 12:47:42 +01:00
junos e33a49c9fc Add a demo of pipeline. 2021-11-17 10:44:49 +01:00
junos d34c2ec5e9 Merge branch 'ambient' into ml_pipeline 2021-11-17 10:39:55 +01:00
junos 005b09cfdf [WIP] Fix tests to use pyprojroot. 2021-10-29 12:07:12 +02:00
junos 6fc0d962ae Remove low values of pressure. 2021-10-22 18:09:17 +02:00
junos 92fbda242b Explore barometer and temperature data.
Add docstrings to models.
2021-10-14 17:59:33 +02:00
junos 6302a0f0d9 Merge ambient sensors into one file.
Explore barometer sensor data for one phone.
2021-10-13 16:57:38 +02:00
junos a63a7eac99 [WIP] Add a test for SensorFeatures.
Additional analysis for adherence.
Small corrections.
2021-10-13 13:39:58 +02:00
junos b8c7606664 Add an option to read cached labels from a file. 2021-09-15 15:45:49 +02:00
junos ed062d25ee Add export capabilities to labels.py. 2021-09-15 15:36:36 +02:00
junos 20748890a8 Further refactor by moving helper functions. 2021-09-15 15:14:54 +02:00
junos 28699a0fdf Enable reading features from csv files. 2021-09-14 17:42:34 +02:00
junos af9e81fe40 Document the SensorFeatures class and its __init__ method. 2021-09-13 17:43:47 +02:00
junos b19eebbb92 Refactor machine_learning/pipeline.py by defining one class by file. 2021-09-13 11:41:57 +02:00
junos c1bb4ddf0f Save calculated features to csv files. 2021-08-23 16:36:26 +02:00
junos 0152fbe4ac Delete the leftover class.
Add more prints.
2021-08-23 16:09:23 +02:00
junos 3611fc76f7 Fill NaNs after merging all features. 2021-08-21 19:48:57 +02:00
junos ee30c042ea Fill NaNs introduced in merge for proximity. 2021-08-21 19:40:42 +02:00
junos a71e132edf Prepare the first full pipeline. 2021-08-21 19:04:09 +02:00
junos 24c4bef7e2 Print some more messages. 2021-08-21 19:03:44 +02:00
junos 11381d6447 Add some print statements for monitoring progress. 2021-08-21 18:54:02 +02:00