f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
...
And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
3af8de6235
Create feature provider script.
2022-03-30 10:40:53 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
9478dc94f2
Add an else.
...
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2022-03-30 10:40:53 +02:00
916bb21a53
Merge branch 'labels' into run_test_participant
2022-03-16 18:56:00 +01:00
c6144f8403
Reverse JCQ items.
2022-03-16 18:55:46 +01:00
fec7cc9550
Merge branch 'labels' into run_test_participant
2022-03-16 18:30:03 +01:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
155395512c
Merge branch 'labels' into run_test_participant
2022-03-16 17:09:53 +01:00
cb116100dd
Move preprocessing to features.
2022-03-16 17:06:42 +01:00
19b9da0ba3
Separate function definitions from main.
2022-03-16 16:49:28 +01:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
5f293211a7
Reformat.
2022-03-15 13:28:51 +01:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
b09522a8af
Merge branch 'labels' into run_test_participant
2022-03-09 17:58:44 +01:00
d4a4bbbff0
Remove unused columns.
2022-03-09 17:58:36 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
42d62f16d0
Add RAPIDS mandatory columns for ESM.
2022-03-09 17:31:37 +01:00
a159ca3d3a
Merge branch 'labels' into run_test_participant
2022-03-08 15:43:42 +01:00
2bef86b1da
Add a format for ESM and add to config.
2022-03-08 15:43:25 +01:00
d8e9a309f7
Rename features and write baseline_interim.
2022-03-08 15:10:36 +01:00
ba7c3e620b
Merge branch 'master' into run_test_participant
2022-03-01 12:03:14 +01:00
a3a4f04ffe
Setting with : produces NaNs.
2022-03-01 12:02:57 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
631581cc8a
Merge branch 'master' into run_test_participant
2022-03-01 11:42:19 +01:00
d3ebfeeabd
Write questionnaire data to data/interim.
2022-03-01 11:42:08 +01:00
70e077f6ab
Merge branch 'master' into run_test_participant
2022-03-01 11:40:17 +01:00
f13a91044d
Write questionnaire data to data/interim.
2022-03-01 11:39:58 +01:00
b5a6317f4b
Calculate JCQ control and demand control ratio.
...
Include norms and corresponding quartile.
2022-02-28 18:51:47 +01:00
2fed962644
Calculate JCQ demand score.
...
Hardcode question IDs to be reversed.
2022-02-28 18:30:41 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
9a74e74d08
Add the baseline features rule to snakefile.
...
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
43e5ac7918
Merge branch 'master' into run_test_participant
2022-02-23 18:06:07 +01:00
07da6be398
Add age, gender, and language as features.
...
Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
c801f66533
Retain a single participant ID.
...
Do not plot heatmaps as this is bugged.
2022-02-23 11:10:54 +01:00
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
bf9c764c97
Split baseline data to participants.
...
And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
junos