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847 Commits (8ef2e6191fb7459eb125aacd4d8becc923d83bbc)

Author SHA1 Message Date
JulioV 8ef2e6191f Update snakefile and config for tests 2021-01-14 15:24:55 -05:00
JulioV fa10cbf86d Merge branch 'feature/fix-location-processing' into develop 2021-01-14 14:35:36 -05:00
JulioV d0fe4d4c28 Add ALL_RESAMPLED flag and accuracy limit 2021-01-14 14:34:25 -05:00
JulioV 4c1e311135 Add error msg for invalid phone data yield sensors 2021-01-14 14:31:40 -05:00
JulioV 585bf7bc5d Add code so new feature providers can be added for the new four sensors 2021-01-14 14:31:40 -05:00
JulioV 8fd1d9dc29 Add four new sensors without providers 2021-01-14 14:31:40 -05:00
JulioV 38fadbf202
Feature/doryab location clustering (#111) 
* Added OPTICS -  lightweight clustering algorithm.

* Changed the error message for inconsistent parameters in CONFIG

* Removing hardcoded values and changing default EPS value in the clustering algorithm.

* Added Observation in Doryab Feature docs.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
 2021-01-14 14:22:51 -05:00
JulioV 22f2bfd211 Docker repo only builds on release 2021-01-07 17:16:01 -05:00
JulioV ee2882fe2a Modified change log 2021-01-07 16:27:29 -05:00
JulioV b7ba3c6407
Feature/location doryab fix (#109) 
* Fixing the doryab location features for context of clustering.

* Fixed the wrong shifting while calculating the distance.

* Refractoring the haversine function

* Removed comments.

* Cleaning parts of the code.

* Updated the documentation for CLUSTER_ON parameter.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
 2021-01-07 16:20:46 -05:00
JulioV 9fc48ee0dc Merge branch 'feature/fitbit-fix' into develop 2021-01-06 12:10:38 -05:00
JulioV 3dd0e989a7 Update Doryab location docs 2021-01-06 12:09:06 -05:00
JulioV 4926497ae2 Fix bugs in Fitbit data parsing 
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
 2021-01-06 11:43:01 -05:00
JulioV 5203aa60d1 Fix bugs in create participants files script 
- The PHONE and FITBIT flags were mixed up
- The start/end dates from the CSV file weren't being parsed correctly
 2021-01-06 11:14:15 -05:00
JulioV 3a80f93771 Fix segment error when device ids is empty 2021-01-06 11:12:10 -05:00
JulioV af048b213d Merge branch 'feature/rlib-fix' into develop 2021-01-05 19:26:53 -05:00
JulioV b343399ffa Add libglpk40 dependency 
To CI tests, dockerfile and installation

Add libglpk40 to dockerfile and installation
 2021-01-05 19:24:49 -05:00
JulioV 7921bc28a9 Update RSPM URL in tests CI 2021-01-05 18:43:19 -05:00
JulioV 9a55efaced Merge branch 'feature/docker-updates' into develop 2021-01-05 18:38:36 -05:00
JulioV aaa9ad22a2 Update changelog 2021-01-05 18:37:21 -05:00
JulioV f6e66a43f0 Clarify in DB credential configuration that we only support MySQL 2021-01-05 18:36:55 -05:00
JulioV f521d45b42 Update CI to create a release on a tagged push that passes the tests 2021-01-05 18:36:33 -05:00
JulioV 9418e6e936 Update docker and linux instructions to use RSPM binary repo for for faster installation 2021-01-05 18:36:19 -05:00
JulioV 2b1f3f230c v0.3.1 2020-12-21 16:30:46 -05:00
JulioV 29e3d9bf37 - Update R and Python virtual environments 
- Add GH actions CI support for tests and docker
- Add release and test badges to README
 2020-12-20 18:35:54 -05:00
JulioV 5551a1e6f3 Merge branch 'feature/docker-ci' into develop 2020-12-20 18:11:56 -05:00
JulioV 146db9db61 Add docker gha 2020-12-20 18:06:01 -05:00
JulioV 57d51378a3 Merge branch 'hotfix/v0.2.6' into develop 2020-12-20 17:04:08 -05:00
JulioV 67e0caa2fe Fix old versions banner on nested pages 2020-12-20 17:03:11 -05:00
JulioV 51c7739bfc Revert "Start support for phone_keyboard" 
This reverts commit dd95b4f941.
 2020-12-20 16:29:40 -05:00
JulioV 5e87db9952 Merge branch 'feature/tests_ci' into develop 2020-12-20 15:56:43 -05:00
JulioV 62067a865c Add curl dependcy for R 2020-12-20 14:26:18 -05:00
JulioV b2f903cb6d Remove unused files 2020-12-20 14:23:40 -05:00
JulioV 46b99a83c8 Merge branch 'feature/conda-cache' into develop 2020-12-20 13:57:03 -05:00
JulioV d39b700b5f Update git flow docs, set keyboard flag to false 2020-12-20 13:55:41 -05:00
JulioV ac4526df5d Update docs, add renv and conda cache,& release CI 2020-12-20 13:54:31 -05:00
JulioV 9bf6042ea9 Merge branch 'hotfix/v0.2.5' into develop 2020-12-18 22:47:12 -05:00
JulioV d352b2c607 Fix docs deploy typo 2020-12-18 22:46:30 -05:00
JulioV 9e8178edbd Merge branch 'hotfix/v0.2.4' into develop 2020-12-18 22:36:25 -05:00
JulioV 265163d228 Fix broken links in landing page and docs deploy 2020-12-18 22:35:10 -05:00
JulioV 079547e60d Update virtual envs 2020-12-18 14:06:28 -05:00
JulioV 41f19ed781 Merge branch 'hotfix/v0.2.3' into develop 2020-12-18 11:27:39 -05:00
JulioV 1b65f11b89 Fix participant IDS in the example analysis workflow 2020-12-18 11:27:04 -05:00
JulioV e263546bf8 Add release and test badges 2020-12-18 11:03:58 -05:00
abhineethreddyk 749ee55955 Migrated testing from Travis to Github Actions - part 4 2020-12-15 01:03:14 -05:00
abhineethreddyk 29c85ee46f Migrated testing from Travis to Github Actions - part 3 2020-12-14 22:33:50 -05:00
abhineethreddyk e41b14af6d Migrated testing from Travis to Github Actions - part 2 2020-12-14 22:26:07 -05:00
abhineethreddyk 6234675a36 Merge branch 'develop' of https://github.com/carissalow/rapids into develop 2020-12-14 22:16:12 -05:00
abhineethreddyk c59d4a66eb Migrated testing from Travis to Github Actions and updated config and Snakemake files in the testing directory - part 1 2020-12-14 22:15:39 -05:00
JulioV dd95b4f941 Start support for phone_keyboard 2020-12-14 13:42:22 -05:00