Commit Graph

257 Commits (8c8378f74abed2b580f6d2a845361c1d65b4b381)

Author SHA1 Message Date
Meng Li 8c8378f74a Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC 2020-05-15 18:42:03 -04:00
Meng Li 5fab99d8df Add one rule to calculate the ratio of cells with missing values for cleaned features 2020-05-15 18:25:07 -04:00
Meng Li 12302a9486 Change path of cleaned features in Snakefile 2020-05-15 18:10:36 -04:00
Meng Li 6e99e69f8c Save cleaned features with different data cleaning threasholds under different folders 2020-05-15 17:59:14 -04:00
Meng Li 78cd8159be Fix bug of clean_features_for_model 2020-05-15 17:53:43 -04:00
Meng Li 915bdd04b1 Parse Fitbit summary and intraday data; Extract Fitbit daily features from summary data 2020-05-15 17:51:00 -04:00
kaguillera d07bb9ed5f Minor documentation correction 2020-05-15 16:02:21 -04:00
kaguillera 71256f8b4b Added testing documentation 2020-05-15 15:58:33 -04:00
kaguillera 7933065cec Added Contributors page in docs 2020-05-15 10:26:20 -04:00
JulioV 790c748d57
Update quick_rule.rst 2020-05-14 19:43:58 -04:00
kaguillera 80417bead0 Added Travis Xenial to ensure build passes 2020-05-14 16:32:11 -04:00
kaguillera 93e3b4204e Minor Documentation corrections 2020-05-14 16:06:13 -04:00
JulioV c30bf4d24f
Update renv.snakefile 2020-05-06 18:00:44 -04:00
JulioV 32d6549793
Update installation.rst 2020-05-04 10:30:17 -04:00
JulioV 817829b547
Update installation.rst 2020-05-04 10:28:58 -04:00
JulioV f0674122ff Replace packrat with renv 2020-05-01 19:46:04 -04:00
kaguillera 07fe3e10af Trying CRAN CRAN.R mirror 2020-05-01 18:19:28 -04:00
kaguillera c31501a037 Trying CRAN cran.us mirror 2020-05-01 18:10:13 -04:00
kaguillera 0437ac87e2 Trying CRAN ussg mirror 2020-05-01 17:58:59 -04:00
kaguillera bbf9da0a8d Implemented Caching in Travis 2020-05-01 17:41:57 -04:00
kaguillera 880437e1d7 Testing Slack notification for Travis 2020-05-01 17:17:00 -04:00
kaguillera 9be1fb8c76 Travis testing attempt 4.7 2020-05-01 15:28:14 -04:00
kaguillera 0c6b2df62d Travis testing attempt 4.6 after packrat update 2020-05-01 15:21:38 -04:00
JulioV b42a84afb7 Update packrat to work with Travis and R 4.0.0 2020-05-01 14:35:16 -04:00
kaguillera 9be1937430 Travis testing attempt 4.5 2020-05-01 14:17:40 -04:00
kaguillera 329c592526 Travis testing attempt 4.4 2020-05-01 10:28:12 -04:00
kaguillera 11f0589051 Travis testing attempt 4.3 2020-04-30 18:02:57 -04:00
kaguillera 07c1e4e21d Travis testing attempt 4.2 2020-04-30 17:44:51 -04:00
kaguillera 640e6e58b3 Travis testing attempt 4.1 2020-04-30 17:21:45 -04:00
kaguillera 02d042448d Travis testing attempt 4.0 2020-04-30 16:55:48 -04:00
kaguillera a35545587a Travis testing attempt 3.9 2020-04-30 16:48:07 -04:00
kaguillera af501b03d6 Travis testing attempt 3.8 2020-04-30 16:07:24 -04:00
kaguillera 33783a7269 Travis testing attempt 3.7 2020-04-30 15:59:27 -04:00
kaguillera 1e3cd169d2 Travis testing attempt 3.6 2020-04-30 15:47:36 -04:00
Meng Li 6ed52e7d1a Change the method of computing missing value cells 2020-04-30 15:40:55 -04:00
kaguillera 0463558aee Travis testing attempt 3.5 2020-04-30 15:12:26 -04:00
kaguillera a3d6b0899c Travis testing attempt 3.4 2020-04-30 13:02:31 -04:00
kaguillera 97c6158dc5 Travis testing attempt 3.3 2020-04-30 12:56:15 -04:00
kaguillera 1339cef137 Travis testing attemet 3.2 2020-04-30 12:51:55 -04:00
kaguillera c17493708c Travis testing attempt 3.1 2020-04-30 12:30:07 -04:00
kaguillera f33fe20cef Travis testing attempt 3 2020-04-30 11:12:29 -04:00
Meng Li 2720b24c0a Make screen_features.py script compatible with both Pandas 0.25.2 and 1.0.3. 2020-04-30 10:49:49 -04:00
Meng Li 7cbb227214 Add modeling module 2020-04-29 18:53:54 -04:00
kaguillera b688a0827f Travis attempt 2 2020-04-29 18:37:28 -04:00
kaguillera 88a404d2ab Initial Travis test 2020-04-29 18:27:39 -04:00
Meng Li f292ba3bff Merge branch 'master' of https://github.com/carissalow/rapids 2020-04-29 15:05:18 -04:00
Meng Li 9ddb50ed59 Split days threshold of data cleaning into days_before_surgery and days_after_discharge
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-04-29 14:37:40 -04:00
kaguillera b78c0504d3 The initial testing framework 2020-04-29 11:44:31 -04:00
JulioV 5a2049f533 Replace NAs with 0 for bluetooth countscansmostuniquedevice 2020-04-27 21:55:23 +00:00
Meng Li 3314040912 Consider "walking" for AR mobile episodes 2020-04-20 18:09:05 -04:00