Commit Graph

396 Commits (8c726f5d4f7a2273188627d1a511a7c0b2281afd)

Author SHA1 Message Date
JulioV 8c726f5d4f Start empatica support 2021-02-21 17:32:41 -05:00
JulioV d8813e2d04 Fix bug when any of the rows from any sensor do not belong a time segment 2021-02-09 14:51:54 -05:00
Meng Li b67f990816 Add new `FITBIT_DATA_YIELD` `RAPIDS` provider 2021-02-02 18:30:21 -05:00
nikunjgoel95 9b248c449d Fixing and adding MAXIMUM_ROW_DURATION. 2021-02-02 11:38:13 -05:00
nikunjgoel95 e7fc8f44f2 Removing Sampling Frequency and fixing ROG, location entropy and normalized location entropy. 2021-02-02 11:38:08 -05:00
nikunjgoel95 0bbf15f52e Fixed the features dependent on time duration. 2021-02-02 11:36:14 -05:00
Meng Li 3d0d062491 Fix HR summary bug: do not consider rows with restinghr=0 2021-02-01 17:29:30 -05:00
Meng Li f83c5a585e Fix HR intraday bug: minutesonZONE features are 0 2021-02-01 13:57:12 -05:00
JulioV aefc794274 Fix location processing when certain columns don't exist 2021-02-01 11:49:22 -05:00
abhineethreddyk dbf57f43f3 Updated battery feature and its testing for periodic 2021-01-31 20:24:43 -05:00
Meng Li 25a3492eba Drop rows without "assigned_segments" column before feature extraction 2021-01-21 19:41:17 -05:00
Meng Li 797de54b34 Fix merge bug of fetch_provider_features() function 2021-01-21 14:58:31 -05:00
Meng Li 5f60aac5c8 Fix KeyError bug of parsing steps data 2021-01-20 11:26:28 -05:00
JulioV d0fe4d4c28 Add ALL_RESAMPLED flag and accuracy limit 2021-01-14 14:34:25 -05:00
JulioV 38fadbf202
Feature/doryab location clustering (#111)
* Added OPTICS -  lightweight clustering algorithm.

* Changed the error message for inconsistent parameters in CONFIG

* Removing hardcoded values and changing default EPS value in the clustering algorithm.

* Added Observation in Doryab Feature docs.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-14 14:22:51 -05:00
JulioV b7ba3c6407
Feature/location doryab fix (#109)
* Fixing the doryab location features for context of clustering.

* Fixed the wrong shifting while calculating the distance.

* Refractoring the haversine function

* Removed comments.

* Cleaning parts of the code.

* Updated the documentation for CLUSTER_ON parameter.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-07 16:20:46 -05:00
JulioV 4926497ae2 Fix bugs in Fitbit data parsing
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
2021-01-06 11:43:01 -05:00
JulioV 5203aa60d1 Fix bugs in create participants files script
- The PHONE and FITBIT flags were mixed up
- The start/end dates from the CSV file weren't being parsed correctly
2021-01-06 11:14:15 -05:00
JulioV 3a80f93771 Fix segment error when device ids is empty 2021-01-06 11:12:10 -05:00
JulioV 51c7739bfc Revert "Start support for phone_keyboard"
This reverts commit dd95b4f941.
2020-12-20 16:29:40 -05:00
JulioV dd95b4f941 Start support for phone_keyboard 2020-12-14 13:42:22 -05:00
JulioV 63202c62cc Fix BT doryab bug and update change log 2020-12-12 17:11:48 -05:00
JulioV 05627296f4 Fix filter_data_by_segment bug 2020-12-12 17:10:59 -05:00
JulioV 5bd1bfe856 Add new bluetooth doryab features and deprecate rapids provider 2020-12-12 17:01:46 -05:00
JulioV 266dd28d02 Add bluetooth doryab features 2020-12-11 12:03:22 -05:00
JulioV ae21c076cd Fix conversation data bug 2020-12-04 15:23:08 -05:00
JulioV 9a02e93b25 Swap RMySQL for RMariaDB 2020-12-04 14:57:13 -05:00
Meng Li 9a0e57301b Update 4 plots for time_segments 2020-12-03 21:00:32 -05:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
JulioV c24cba8679 Event segments' device id can be one of any assigned to a participant 2020-12-02 17:17:55 -05:00
Meng Li 0bd43c139c Update plot#1: histogram_phone_data_yield 2020-12-01 14:21:33 -05:00
Meng Li 016bdbfe8c Update Python feature scripts to add sensor and provider names automatically 2020-11-30 14:42:19 -05:00
Meng Li 70991d6667 Add dates filter while parsing fitbit data 2020-11-30 12:34:14 -05:00
Meng Li 5178be585d Rename modeling.py to modelling.py & Update example_config.yaml 2020-11-25 22:35:38 -05:00
JulioV 5f51c94ac6 Separate device data configuration and update docs 2020-11-25 19:42:11 -05:00
Meng Li b4a512faf3 Add analysis example workflow 2020-11-25 16:34:05 -05:00
JulioV ced3305ddb Update R feature scripts to add sensor and provider names automatically 2020-11-25 14:49:42 -05:00
JulioV f02ca2624d Add phone yield sensor 2020-11-24 19:12:16 -05:00
JulioV 555811211d Fix column check in day segment compute 2020-11-24 14:51:06 -05:00
Meng Li 767e838c87 Fix HR&Sleep bugs 2020-11-24 13:43:24 -05:00
Meng Li deba6b9e4f Update sleep summary features for segments 2020-11-23 12:01:00 -05:00
Meng Li 10384204a1 Update Fitbit HR feature name 2020-11-20 11:31:16 -05:00
Meng Li d3241c79f1 Update filter_data_by_segment() function: call chunk_episodes() inside the filter function 2020-11-19 17:27:53 -05:00
JulioV 895b70719e Update minimal example and fix create participants bug 2020-11-17 17:27:48 -05:00
Meng Li a71efd6b85 Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY 2020-11-11 21:16:48 -05:00
Meng Li 9fc36f67e2 Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY 2020-11-11 17:27:46 -05:00
Meng Li 39632c66f5 Update steps features for segments 2020-10-30 18:57:04 -04:00
JulioV 7f7eac0769 Merge branch 'ds2' into day_segments 2020-10-28 17:53:00 -04:00
JulioV c5197b6c5f Merge branch 'master' into ds2 2020-10-28 17:50:37 -04:00
Meng Li 93055dacee Update HR main.py 2020-10-28 17:02:21 -04:00