JulioV
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51c7739bfc
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Revert "Start support for phone_keyboard"
This reverts commit dd95b4f941.
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2020-12-20 16:29:40 -05:00 |
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JulioV
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41f19ed781
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Merge branch 'hotfix/v0.2.3' into develop
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2020-12-18 11:27:39 -05:00 |
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JulioV
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1b65f11b89
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Fix participant IDS in the example analysis workflow
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2020-12-18 11:27:04 -05:00 |
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JulioV
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dd95b4f941
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Start support for phone_keyboard
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2020-12-14 13:42:22 -05:00 |
Meng Li
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58ed986a61
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Update PIDS in example_config.yaml
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2020-12-04 18:45:16 -05:00 |
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Meng Li
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9a0e57301b
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Update 4 plots for time_segments
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2020-12-03 21:00:32 -05:00 |
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JulioV
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88743b9a14
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Update rule to create analysis workflow participant files
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2020-12-03 12:48:32 -05:00 |
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JulioV
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614e759551
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Refactor day segments to time segments
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2020-12-02 18:41:03 -05:00 |
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Meng Li
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0bd43c139c
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Update plot#1: histogram_phone_data_yield
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2020-12-01 14:21:33 -05:00 |
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Meng Li
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70991d6667
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Add dates filter while parsing fitbit data
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2020-11-30 12:34:14 -05:00 |
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Meng Li
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5178be585d
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Rename modeling.py to modelling.py & Update example_config.yaml
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2020-11-25 22:35:38 -05:00 |
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JulioV
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5f51c94ac6
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Separate device data configuration and update docs
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2020-11-25 19:42:11 -05:00 |
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Meng Li
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b4a512faf3
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Add analysis example workflow
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2020-11-25 16:34:05 -05:00 |
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JulioV
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ced3305ddb
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Update R feature scripts to add sensor and provider names automatically
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2020-11-25 14:49:42 -05:00 |
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JulioV
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f02ca2624d
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Add phone yield sensor
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2020-11-24 19:12:16 -05:00 |
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Meng Li
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deba6b9e4f
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Update sleep summary features for segments
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2020-11-23 12:01:00 -05:00 |
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Meng Li
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a71efd6b85
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Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY
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2020-11-11 21:16:48 -05:00 |
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Meng Li
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b7e22b7440
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Fix fitbit_parse_heartrate rule's table parameter
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2020-11-11 20:23:41 -05:00 |
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Meng Li
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9fc36f67e2
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Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY
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2020-11-11 17:27:46 -05:00 |
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JulioV
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6ac4c05772
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Merge branch 'day_segments' of https://github.com/carissalow/rapids into day_segments
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2020-11-06 17:18:02 -05:00 |
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JulioV
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2aa44fc504
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Change SENSOR_DATA to DEVICE_DATA
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2020-11-04 17:16:46 -05:00 |
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Meng Li
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82873c285d
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Make sure feature rules of all sensors support both Python and R scripts
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2020-11-04 14:05:25 -05:00 |
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Meng Li
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39632c66f5
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Update steps features for segments
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2020-10-30 18:57:04 -04:00 |
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Meng Li
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ed7585c2bf
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Update heartrate features for segments
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2020-10-27 17:55:57 -04:00 |
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JulioV
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d5931c75d8
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Refactor script to create participants files
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2020-10-27 17:13:16 -04:00 |
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Meng Li
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c8176b2d90
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Fix MissingInputException issue of download_fitbit_data rule
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2020-10-27 14:59:47 -04:00 |
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Meng Li
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2601ccde87
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Fix minor bug of download_fitbit_data rule
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2020-10-27 13:40:10 -04:00 |
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JulioV
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b986599226
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Add support to read fitbit data from csv files
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2020-10-26 17:17:53 -04:00 |
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JulioV
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234588c94d
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Expose episode threshold between rows parameter
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2020-10-26 15:28:19 -04:00 |
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JulioV
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1d04aa6807
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Add check for non-overlapping event day segments
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2020-10-23 12:15:26 -04:00 |
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JulioV
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47adb8bc4b
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Add tz support to fitbit
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2020-10-22 14:38:40 -04:00 |
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JulioV
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cff83a7ceb
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Implement parse fitbit data
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2020-10-22 13:08:52 -04:00 |
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JulioV
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c266f6dd10
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Update participant files structure and fitbit download rule
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2020-10-20 19:12:01 -04:00 |
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JulioV
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24bf62a7ab
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Update file names
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2020-10-19 15:07:12 -04:00 |
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Meng Li
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29dcd1f284
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Add accelerometer features of RAPIDS provider
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2020-10-13 11:42:36 -04:00 |
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Meng Li
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236b1cd809
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Update AR module for segments; Refactor input format
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2020-10-07 18:11:06 -04:00 |
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JulioV
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6b1e006b82
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Refactor fused location resampling
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2020-10-07 11:51:31 -04:00 |
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Meng Li
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f1717e59e7
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Update screen&battery episodes features with different segment format
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2020-09-29 17:13:34 -04:00 |
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JulioV
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0dafdd1340
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Redo resample episodes in R, new battery episodes
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2020-09-29 15:18:48 -04:00 |
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JulioV
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303d1472ed
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Change how we compute AR episodes
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2020-09-22 17:32:51 -04:00 |
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JulioV
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a851a460e4
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Change the way we compute battery episodes
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2020-09-22 16:53:51 -04:00 |
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Meng Li
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f806cb44ac
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Fix the bug of screen duration features for different segments
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2020-09-18 20:25:29 -04:00 |
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JulioV
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4dc8d38c66
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Optimise assign to day segment
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2020-09-16 14:54:20 -04:00 |
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JulioV
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3c45f6b152
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Refactor assign to day segment
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2020-09-14 14:21:36 -04:00 |
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JulioV
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98ebf9bd13
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Migrate conversation to new file structure
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2020-09-01 17:07:07 -04:00 |
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JulioV
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8d87f6e497
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Migrate app foreground to new file structure
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2020-09-01 15:25:35 -04:00 |
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JulioV
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e643881058
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Migrate light to new file structure
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2020-09-01 12:01:24 -04:00 |
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JulioV
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eda58d9d2c
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Migrate wifi to new file structure
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2020-08-31 18:51:06 -04:00 |
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JulioV
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77d9d8f025
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Migrate bluetooth to new file structure
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2020-08-31 17:08:26 -04:00 |
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JulioV
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132311da77
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Migrate messages to new file structure
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2020-08-31 13:34:15 -04:00 |
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JulioV
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e269062439
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Migrate calls to new provider file structure
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2020-08-28 17:50:49 -04:00 |
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JulioV
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011b9736d5
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Refactor the function to fetch provider features
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2020-08-28 17:40:23 -04:00 |
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JulioV
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b0f1477d7e
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Migrate location providers to new file structure and segments
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2020-08-28 13:53:00 -04:00 |
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JulioV
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14d2d694ce
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Migrate messages to new segments
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2020-08-26 13:01:58 -04:00 |
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JulioV
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31ec5b0da4
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Finalise new day segment structure with calls as example
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2020-08-26 12:09:53 -04:00 |
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JulioV
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026d056378
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Simplify window workflow
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2020-08-20 14:51:22 -04:00 |
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JulioV
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a0b5b5982b
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Setup rules and files to support multiple
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2020-08-20 14:45:09 -04:00 |
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Meng Li
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00385dc54d
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Discard useless parameters and related code of example
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2020-08-17 10:48:15 -04:00 |
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JulioV
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b83f8ead44
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Refactor snakefiles to smk files and create common.smk
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2020-08-11 18:45:50 -04:00 |
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JulioV
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3f48a47a14
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Fix optional input files for phone sensed bins
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2020-08-11 18:02:52 -04:00 |
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JulioV
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08ce250839
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Unify conversation timestamp for ios
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2020-08-11 16:18:06 -04:00 |
nikunjgoel95
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df7a52cd6c
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Added Sampling Frequency to Doryab Location Features.
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2020-08-05 13:02:34 -04:00 |
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Meng Li
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973e1669fa
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Move baselines into a folder; rename column of "num_of_participants" with "num_of_rows" in modeling.py
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2020-08-05 07:51:35 -04:00 |
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Meng Li
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0b65cc0546
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Add example_profile
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2020-08-03 17:30:15 -04:00 |
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Meng Li
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c2b25a146d
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Replace sensor name with table name in heatmap_days_by_sensors section
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2020-08-03 15:19:45 -04:00 |
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Meng Li
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e13b89b125
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Add restore_sql_file rule; notsummarised module; diff platforms for heatmap_days_by_sensors
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2020-08-03 13:09:16 -04:00 |
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Meng Li
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21c3251066
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Delete mystudy.snakefile and add all rules to models.snakefile
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2020-07-29 15:25:26 -04:00 |
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Meng Li
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c498b8d2df
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Add hours and bins thresholds for analysis section
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2020-07-27 22:59:32 -04:00 |
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Meng Li
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93157db210
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Data cleaning section: replace "day_type" with "day_idx"
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2020-07-27 18:27:36 -04:00 |
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Meng Li
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af6678c70c
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Update visualization section: add MIN_VALID_BINS_PER_HOUR
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2020-07-26 20:11:25 -04:00 |
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JulioV
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388f09a003
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Add missing wifi table
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2020-07-24 16:35:41 -04:00 |
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Meng Li
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b3aa4d82e1
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Overall compliance heatmap: shows all dates for all participants (only supports last certain dates previously)
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2020-07-24 12:58:48 -04:00 |
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JulioV
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5f771618ae
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Add screen episode filter parameters
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2020-07-23 14:38:59 -04:00 |
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nikunjgoel95
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faad8f5a8f
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Added minutes of data in a day/epoch.
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2020-07-23 14:23:32 -04:00 |
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Meng Li
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b0354393ae
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Add "corr_method" param to heatmap_features_correlations.py
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2020-07-22 20:00:14 -04:00 |
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Meng Li
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c135b6ef78
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Add visualization for data exploration
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2020-07-22 16:47:32 -04:00 |
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Meng Li
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124843f96e
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Make phone_valid_sensed_days rule works for different min_valid_hours_per_day thresholds
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2020-07-21 20:41:24 -04:00 |
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nikunjgoel95
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0ada1292ed
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Added maximum_gap_allowed parameter
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2020-07-21 18:56:43 -04:00 |
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nikunjgoel95
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024ae1a549
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Added Doryab's location features to rapids.
Co-authored-by: JulioV <juliovhz@gmail.com>
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2020-07-16 14:26:43 -04:00 |
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JulioV
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d2704296f3
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Refactor valid sensed bins and days
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2020-07-09 13:01:50 -04:00 |
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JulioV
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06edf53016
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Add support for multi-platform participants
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2020-06-30 17:34:18 -04:00 |
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JulioV
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6608e47918
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Fix conversation plugin bug that mixed android tables with ios
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2020-06-25 16:38:24 -04:00 |
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JulioV
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1bdb52dd65
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Add functionality to exlcude step data based on sleep
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2020-06-24 13:33:58 -04:00 |
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JulioV
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36017d5dca
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Refactor Snakefile and docs. Rename SMS scripts
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2020-06-23 11:33:34 -04:00 |
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Meng Li
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a121c0fe7b
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Split accelerometer features in config file; drop count; add more stats features
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2020-06-22 12:01:17 -04:00 |
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nikunjgoel95
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1409de2832
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Added Converstion Features.
Updated config.yaml, Snakefile, Features.Snakefile and documentation.
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2020-06-19 01:27:28 -04:00 |
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Meng Li
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e133b8b530
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Refactor fitbit sleep features
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2020-06-12 18:44:05 -04:00 |
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Meng Li
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dcc7ca14e3
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Refactor fitbit heartrate features
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2020-06-12 16:04:03 -04:00 |
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JulioV
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8fbafcbe0c
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Fix location bug and improve fused resampling
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2020-06-11 12:25:49 -04:00 |
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Meng Li
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0115fd14f6
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Refactor fitbit step features
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2020-06-05 21:29:39 -04:00 |
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Meng Li
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adb170c3fa
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Fix step feature extraction input bug
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2020-06-04 14:40:32 -04:00 |
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JulioV
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53db3fbaac
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Fix bug so download_dataset receives the right fitbit table name
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2020-06-01 18:54:19 -04:00 |
kaguillera
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7f6448c431
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Add Travis CI
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2020-05-18 19:24:34 -04:00 |
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Meng Li
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34ffe4abaf
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Add the rule to merge population model results
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2020-05-15 18:49:14 -04:00 |
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Meng Li
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8df8a5c2b3
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Add baseline
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2020-05-15 18:45:45 -04:00 |
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Meng Li
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8c8378f74a
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Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC
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2020-05-15 18:42:03 -04:00 |
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Meng Li
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5fab99d8df
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Add one rule to calculate the ratio of cells with missing values for cleaned features
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2020-05-15 18:25:07 -04:00 |
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Meng Li
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6e99e69f8c
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Save cleaned features with different data cleaning threasholds under different folders
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2020-05-15 17:59:14 -04:00 |
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Meng Li
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915bdd04b1
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Parse Fitbit summary and intraday data; Extract Fitbit daily features from summary data
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2020-05-15 17:51:00 -04:00 |
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JulioV
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c30bf4d24f
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Update renv.snakefile
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2020-05-06 18:00:44 -04:00 |