junos
/
rapids
1
0
Fork 0
Code Issues Pull Requests Projects Releases Wiki Activity
1,282 Commits
15 Branches
26 Tags
26 MiB
Commit Graph

273 Commits (53ec52a9546fe05675f3c6f36404f2fd01793091)

Author SHA1 Message Date
JulioV 3c45f6b152 Refactor assign to day segment 2020-09-14 14:21:36 -04:00
kaguillera 441cdf69c3 Fix Travis attempt 4 2020-09-03 14:36:42 -04:00
kaguillera 67d11e449f Fix Travis attempt 3 2020-09-03 14:18:01 -04:00
kaguillera 4be8accc45 Attempt to fix Travis 2 2020-09-03 13:44:07 -04:00
kaguillera 0613bcb4b8 Attempt to fix Travis 1 2020-09-03 13:19:44 -04:00
kaguillera 5d3e6efc41 New Bluetooth Testing 2020-09-03 12:04:29 -04:00
JulioV 98ebf9bd13 Migrate conversation to new file structure 2020-09-01 17:07:07 -04:00
JulioV 8d87f6e497 Migrate app foreground to new file structure 2020-09-01 15:25:35 -04:00
JulioV e643881058 Migrate light to new file structure 2020-09-01 12:01:24 -04:00
JulioV eda58d9d2c Migrate wifi to new file structure 2020-08-31 18:51:06 -04:00
JulioV 77d9d8f025 Migrate bluetooth to new file structure 2020-08-31 17:08:26 -04:00
JulioV 132311da77 Migrate messages to new file structure 2020-08-31 13:34:15 -04:00
JulioV e269062439 Migrate calls to new provider file structure 2020-08-28 17:50:49 -04:00
JulioV b0f1477d7e Migrate location providers to new file structure and segments 2020-08-28 13:53:00 -04:00
JulioV 31ec5b0da4 Finalise new day segment structure with calls as example 2020-08-26 12:09:53 -04:00
nikunjgoel95 6a5470e338 Splitting Energy Feature in Conversation to Voice and Noise. 2020-08-23 13:20:19 -04:00
JulioV 026d056378 Simplify window workflow 2020-08-20 14:51:22 -04:00
JulioV a0b5b5982b Setup rules and files to support multiple 2020-08-20 14:45:09 -04:00
Meng Li 7a4218a3ce Delete analysis section of config.yaml 2020-08-13 17:12:05 -04:00
JulioV 3f48a47a14 Fix optional input files for phone sensed bins 2020-08-11 18:02:52 -04:00
nikunjgoel95 df7a52cd6c Added Sampling Frequency to Doryab Location Features. 2020-08-05 13:02:34 -04:00
Meng Li c2b25a146d Replace sensor name with table name in heatmap_days_by_sensors section 2020-08-03 15:19:45 -04:00
Meng Li e13b89b125 Add restore_sql_file rule; notsummarised module; diff platforms for heatmap_days_by_sensors 2020-08-03 13:09:16 -04:00
Meng Li 93157db210 Data cleaning section: replace "day_type" with "day_idx" 2020-07-27 18:27:36 -04:00
Meng Li af6678c70c Update visualization section: add MIN_VALID_BINS_PER_HOUR 2020-07-26 20:11:25 -04:00
JulioV 388f09a003 Add missing wifi table 2020-07-24 16:35:41 -04:00
Meng Li b3aa4d82e1 Overall compliance heatmap: shows all dates for all participants (only supports last certain dates previously) 2020-07-24 12:58:48 -04:00
JulioV 5f771618ae Add screen episode filter parameters 2020-07-23 14:38:59 -04:00
nikunjgoel95 faad8f5a8f Added minutes of data in a day/epoch. 2020-07-23 14:23:32 -04:00
Meng Li b0354393ae Add "corr_method" param to heatmap_features_correlations.py 2020-07-22 20:00:14 -04:00
Meng Li c135b6ef78 Add visualization for data exploration 2020-07-22 16:47:32 -04:00
Meng Li 124843f96e Make phone_valid_sensed_days rule works for different min_valid_hours_per_day thresholds 2020-07-21 20:41:24 -04:00
nikunjgoel95 0ada1292ed Added maximum_gap_allowed parameter 2020-07-21 18:56:43 -04:00
JulioV e37b07098f
Fix defaults for Doryab's location features 2020-07-20 16:03:51 -04:00
kaguillera c8d8906359 Attempt to fix travis 1.2 2020-07-20 10:32:04 -04:00
kaguillera 9deb6eae5f Attempt to fix travis 2020-07-20 10:20:20 -04:00
nikunjgoel95 024ae1a549 Added Doryab's location features to rapids. 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-07-16 14:26:43 -04:00
JulioV d2704296f3 Refactor valid sensed bins and days 2020-07-09 13:01:50 -04:00
JulioV b381672cae
Update config.yaml 2020-06-29 13:50:33 -04:00
Meng Li 62f862a738 Fix default for ACCELEROMETER VALID_SENSED_MINUTES 2020-06-26 17:35:29 -04:00
Meng Li 29b04b0601 Fix step bouts features 2020-06-26 17:33:30 -04:00
kaguillera 533d0adab3 Updated sms sensor to messages 2020-06-26 12:20:47 -04:00
nikunjgoel95 0c53fd275e Required changes in config 2020-06-24 17:03:14 -04:00
JulioV 8c647b3b4c
Fix default for STEP EXCLUDE_SLEEP 2020-06-24 13:40:15 -04:00
JulioV 1bdb52dd65 Add functionality to exlcude step data based on sleep 2020-06-24 13:33:58 -04:00
Meng Li 8aa25144f0 Refactor analysis part of snakefile 2020-06-23 20:46:42 -04:00
kaguillera 7bcf674793 Refactored testing after pipeline refactoring 2020-06-23 18:29:01 -04:00
JulioV 36017d5dca Refactor Snakefile and docs. Rename SMS scripts 2020-06-23 11:33:34 -04:00
Meng Li 4d1ff10701 Rename heartrate zone features 2020-06-22 14:15:56 -04:00
Meng Li 99fe86ac2a Rename accelerometer features names 2020-06-22 13:47:25 -04:00
Meng Li a121c0fe7b Split accelerometer features in config file; drop count; add more stats features 2020-06-22 12:01:17 -04:00
Meng Li f07ba22f98 Minor fix for applications_foreground sensor 2020-06-19 16:22:57 -04:00
nikunjgoel95 1409de2832 Added Converstion Features. 
Updated config.yaml, Snakefile, Features.Snakefile and documentation.
 2020-06-19 01:27:28 -04:00
Meng Li e133b8b530 Refactor fitbit sleep features 2020-06-12 18:44:05 -04:00
Meng Li dcc7ca14e3 Refactor fitbit heartrate features 2020-06-12 16:04:03 -04:00
JulioV 8fbafcbe0c Fix location bug and improve fused resampling 2020-06-11 12:25:49 -04:00
Meng Li aa1baaf948 Refactor activity recognition features 2020-06-04 19:32:28 -04:00
JulioV 5656c673d3 Remove varqn and huberm features from calls 2020-06-02 19:48:22 -04:00
Meng Li 8c8378f74a Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC 2020-05-15 18:42:03 -04:00
Meng Li 915bdd04b1 Parse Fitbit summary and intraday data; Extract Fitbit daily features from summary data 2020-05-15 17:51:00 -04:00
Meng Li 7cbb227214 Add modeling module 2020-04-29 18:53:54 -04:00
Meng Li 9ddb50ed59 Split days threshold of data cleaning into days_before_surgery and days_after_discharge 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-29 14:37:40 -04:00
Meng Li 490599c742 Implement AR features for iOS 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-20 18:05:54 -04:00
Meng Li 5696b4f6d4 Add merge module for demographic features and target 2020-04-16 14:20:16 -04:00
Meng Li eac721de84 Add demographic_features and targets module; refactor analysis code 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-16 12:38:28 -04:00
Meng Li 695984586f Add calories module for fitbit_readable_datetime.py 2020-04-15 16:01:02 -04:00
JulioV 010114c1aa Add wifi features 2020-04-13 13:24:52 -04:00
Mingze Cao 8cc93c8791 Refactor battery feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 15:06:25 -05:00
Mingze Cao 2d7d3bfccf Refactor location_barnett features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 12:20:39 -05:00
Mingze Cao c2fbc3ad7a Refactor sms feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 15:02:58 -05:00
Mingze Cao 97c83caebc Refactor fitbit_heartrate feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 14:31:43 -05:00
Mingze Cao a53ba242f8 Refactor google_activity_recognition feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:36:36 -05:00
Mingze Cao 0809001dfa Refactor light features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:02:53 -05:00
Mingze Cao f46e8c0666 Refactor applications_foreground features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 12:31:43 -05:00
Mingze Cao d1c38016de Refactor call features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:51:18 -05:00
Mingze Cao e0d19cbc1b Refactor screen features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:05:16 -05:00
Mingze Cao 3986f4e185 Refactor fitbit_step features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-03 16:03:45 -05:00
Mingze Cao 6045df494d Modify the Accelerometer ‘Metrics’ to Accelerometer ‘Features’ 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-02 16:36:28 -05:00
Mingze Cao 7d770c91f3 Add sumdurationsedentarybout of the fitbit_step sensor 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-02 13:36:54 -05:00
JulioV 0e173872df Refactor select_days_to_analyse, fix merge bugs, add clean metrics for model 2020-03-17 21:15:53 -04:00
Meng Li 7c240a9613 Select days to analyse 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-03-17 17:26:30 -04:00
JulioV 3d4c26754e Rename merge metrics for models and add filter valid sensed days 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-03-12 17:31:46 -04:00
Meng Li b23bb0e402 Add INCLUDE_ZERO_STEP_ROWS flag for step sensor 2020-03-09 15:59:51 -04:00
Meng Li aba9f13332 Add merge metrics module for analysis rules 2020-03-09 13:32:14 -04:00
JulioV 301bd0bf1d
Change default database group name 2020-03-09 12:55:43 -04:00
JulioV 12ceb87090 Merge branch 'master' of https://github.com/carissalow/rapids 2020-03-05 10:32:46 -05:00
JulioV ccc283db16 Add day segment parameter to location barnett rule 2020-03-05 10:32:38 -05:00
Meng Li c8b7275084 Add firstuseafterTIME feature for screen sensor 2020-03-04 12:21:36 -05:00
Meng Li 85f4ec2ab6 Delete screen event features and add countepisode and episodepersensedminutes 2020-03-03 17:31:15 -05:00
JulioV f22d1834ee Add metric filter to barnett location features 2020-02-21 10:58:35 -05:00
JulioV 6bbc916702 Add download_participants functionality 2020-02-10 16:45:34 -05:00
Meng Li 0840235280 Add applications_foreground features 2020-02-07 11:52:55 -05:00
Meng Li 770764ec8a Add heartrate features 2020-02-07 11:35:15 -05:00
Echhit Joshi d82fa0d217 Add Fitbit steps feature extraction 2020-01-29 16:22:53 -05:00
Echhit Joshi db2f3dc50f Fixed 2 Issues: Feature Names, Implementation of metrics in Config File 2020-01-17 11:39:30 -05:00
JulioV 9d00f14f7f Add category (genre) to foreground apps 2020-01-15 18:28:56 -05:00
Meng Li 34c4586e4d Add fitbit raw data and datetime 2020-01-15 17:18:10 -05:00
Meng Li ad514b5d40 Add accelerometer features 2020-01-15 14:15:24 -05:00
Meng Li 2b4e29ce6e Add light features 2020-01-14 09:51:39 -05:00
JulioV cb2ee1ec82 Add switch to barnet_locations.R to use all, all except fused or resample fused locations 2019-12-09 19:15:10 -05:00
JulioV 0ba88203f4 Add resampling for fused location 2019-12-09 18:23:00 -05:00
Meng Li 4390979143 Add unlocksperminute feature and remove countdiff for screen sensor 2019-12-04 16:04:37 -05:00
Meng Li c7ca35d13e Fixed issue #17 and #18 2019-12-02 11:22:50 -05:00
Meng Li 71e4ab3e5c Extract screen features 2019-11-27 14:25:17 -05:00
Meng Li 99d387a7a4 Add day epochs to battery metrics and fix some of them 2019-11-25 12:53:32 -05:00
Echhit Joshi c5a0c1e0d6 Updated G_A_R features with epochs 2019-11-18 14:22:08 -05:00
JulioV 6cf39ad9c4 Add three more features to sms 2019-11-12 15:53:59 -05:00
JulioV 364200a304 Add three more features to missing calls 2019-11-12 15:44:26 -05:00
JulioV 031ceb00e3 Add three more features to calls 2019-11-12 15:40:48 -05:00
JulioV 1d242abbe1 Add min, max, std, and mode to calls metrics 2019-11-11 15:15:20 -05:00
JulioV 2adfe8d81a Fix timezone for US Eastern Time 2019-11-06 17:12:06 -05:00
JulioV 473a328f58 Download fitbit data table 2019-11-06 16:08:50 -05:00
JulioV cf9de4dedd Refactor sms metrics to produce a single file 2019-11-06 15:38:08 -05:00
JulioV 1d1c8e6bf1 Refactor call features to produce a single file 2019-11-06 14:47:33 -05:00
JulioV 911e183c26 Add bluetooth features 2019-11-06 12:19:30 -05:00
JulioV 13a6537b14 Add Barnett's location features 2019-11-05 15:17:20 -05:00
JulioV cca1633728 Add valid sensed days 2019-11-05 12:34:22 -05:00
JulioV d249bcf3f2 Add screen raw data 2019-11-05 11:16:27 -05:00
JulioV 8030624e0a Add battery deltas 2019-11-05 10:47:55 -05:00
JulioV 6287afcb4c Add call features 2019-10-25 10:21:09 -04:00
JulioV 202b881f34 Modularise config for download and readable datetime rules 2019-10-24 17:27:00 -04:00
JulioV ca5e8b6a34 Add communication sms metrics 2019-10-24 16:27:43 -04:00
JulioV 1b1799f9d8 Added dataset download rule 2019-10-24 12:11:24 -04:00