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Rename heartrate zone features

pull/95/head
Meng Li 2020-06-22 14:15:56 -04:00
parent 99fe86ac2a
commit 4d1ff10701
2 changed files with 4 additions and 4 deletions
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2
config.yaml
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@ -121,7 +121,7 @@ HEARTRATE:
DAY_SEGMENTS: *day_segments
# Only daily features are extracted from summary data
SUMMARY_FEATURES: ["restinghr"] # calories related features might be inaccurate: ["caloriesoutofrange", "caloriesfatburn", "caloriescardio", "caloriespeak"]
INTRADAY_FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "lengthoutofrange", "lengthfatburn", "lengthcardio", "lengthpeak"]
INTRADAY_FEATURES: ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "minutesonoutofrangezone", "minutesonfatburnzone", "minutesoncardiozone", "minutesonpeakzone"]
STEP:
DAY_SEGMENTS: *day_segments

6
src/features/fitbit_heartrate/fitbit_heartrate_base.py
View File

@ -50,8 +50,8 @@ def extractHRFeaturesFromIntradayData(heartrate_intraday_data, features, day_seg
heartrate_intraday_features["heartrate_" + day_segment + "_entropyhr"] = heartrate_intraday_data[["local_date", "heartrate"]].groupby(["local_date"])["heartrate"].agg(entropy)
# get number of minutes in each heart rate zone
for feature_name in list(set(["lengthoutofrange", "lengthfatburn", "lengthcardio", "lengthpeak"]) & set(features)):
heartrate_zone = heartrate_intraday_data[heartrate_intraday_data["heartrate_zone"] == feature_name[6:]]
for feature_name in list(set(["minutesonoutofrangezone", "minutesonfatburnzone", "minutesoncardiozone", "minutesonpeakzone"]) & set(features)):
heartrate_zone = heartrate_intraday_data[heartrate_intraday_data["heartrate_zone"] == feature_name[9:-4]]
heartrate_intraday_features["heartrate_" + day_segment + "_" + feature_name] = heartrate_zone.groupby(["local_date"])["device_id"].count() / num_rows_per_minute
heartrate_intraday_features.fillna(value={"heartrate_" + day_segment + "_" + feature_name: 0}, inplace=True)
heartrate_intraday_features.reset_index(inplace=True)
@ -61,7 +61,7 @@ def extractHRFeaturesFromIntradayData(heartrate_intraday_data, features, day_seg
def base_fitbit_heartrate_features(heartrate_summary_data, heartrate_intraday_data, day_segment, requested_summary_features, requested_intraday_features):
# name of the features this function can compute
base_summary_features_names = ["restinghr", "caloriesoutofrange", "caloriesfatburn", "caloriescardio", "caloriespeak"]
base_intraday_features_names = ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "lengthoutofrange", "lengthfatburn", "lengthcardio", "lengthpeak"]
base_intraday_features_names = ["maxhr", "minhr", "avghr", "medianhr", "modehr", "stdhr", "diffmaxmodehr", "diffminmodehr", "entropyhr", "minutesonoutofrangezone", "minutesonfatburnzone", "minutesoncardiozone", "minutesonpeakzone"]
# the subset of requested features this function can compute
summary_features_to_compute = list(set(requested_summary_features) & set(base_summary_features_names))
intraday_features_to_compute = list(set(requested_intraday_features) & set(base_intraday_features_names))