11c64cfc1a
Include all participants again.
2022-04-12 17:20:19 +02:00
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
2022-04-08 15:42:04 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
2022-04-06 17:47:03 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
916bb21a53
Merge branch 'labels' into run_test_participant
2022-03-16 18:56:00 +01:00
c6144f8403
Reverse JCQ items.
2022-03-16 18:55:46 +01:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
155395512c
Merge branch 'labels' into run_test_participant
2022-03-16 17:09:53 +01:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
b09522a8af
Merge branch 'labels' into run_test_participant
2022-03-09 17:58:44 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
a159ca3d3a
Merge branch 'labels' into run_test_participant
2022-03-08 15:43:42 +01:00
2bef86b1da
Add a format for ESM and add to config.
2022-03-08 15:43:25 +01:00
ba7c3e620b
Merge branch 'master' into run_test_participant
2022-03-01 12:03:14 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
70e077f6ab
Merge branch 'master' into run_test_participant
2022-03-01 11:40:17 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
43e5ac7918
Merge branch 'master' into run_test_participant
2022-02-23 18:06:07 +01:00
07da6be398
Add age, gender, and language as features.
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Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
c801f66533
Retain a single participant ID.
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Do not plot heatmaps as this is bugged.
2022-02-23 11:10:54 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
1efb8e3112
Clean features across participants.
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Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
2fb068cb8b
Do not calculate accelerometer features.
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Add data cleaning.
2022-01-07 12:20:51 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
15653b6e70
Add forgotten line for hashed app names in config.
2021-12-15 17:26:54 +01:00
4485c4c95e
Delete columns we don't have.
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Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
633384c6a9
Use all available sensors for PHONE_YIELD.
2021-12-08 19:04:19 +01:00
8e2222f307
Bring back deleted lines which are required.
2021-12-08 18:59:10 +01:00
712ff74898
Set table names and calculate all relevant features.
2021-12-08 18:37:34 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
2b52f686b3
Define daily segments.
2021-12-08 18:20:22 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
4829b155d5
Make config changes for minimal workflow.
2021-11-17 18:53:44 +01:00
7f4683e0fe
Feature/screen default maxlength ( #164 )
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Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
2021-10-14 09:26:06 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
e1cfcd46e4
Update example workflow for app episode features
2021-07-01 18:08:33 -04:00
junos
Meng Li