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1178 Commits (22513415e9b8efaddef3d913fcc969b77c5e3183)

Author SHA1 Message Date
junos 22513415e9 Do not ask for specific patch numbers of libraries! 2021-12-03 14:38:25 +01:00
junos 0b8a493ff2 Incorporate mulitple timezones into RAPIDS. 2021-12-01 18:20:27 +01:00
junos f0d29d0d1a Incorporate DB query for usernames into snakemake workflow. 2021-12-01 18:14:27 +01:00
junos 37b3460b76 Use Empatica wristband numbers as provided in CSV. 2021-12-01 17:20:57 +01:00
junos 22f9e0722d Start preparing the true usernames CSV file. 2021-12-01 11:29:22 +01:00
junos 0be4cd5a8f Remove unnecessary library. 2021-11-30 17:08:07 +01:00
junos b99a3c19ed Update dbplyr to the latest version. 
distinct changed its behaviour from 2.0.0 to 2.1.0.
 2021-11-29 18:34:26 +01:00
junos 04ad2d0b81 Source specific container script. 
It is probably not worth the effort of making this general.
 2021-11-29 18:19:47 +01:00
junos da5ff0f36e Correct small errors in settings. 2021-11-29 18:04:06 +01:00
junos 35d9779026 Prepare the tibble in requested format. 
Write it to a CSV file.
 2021-11-29 17:54:16 +01:00
junos 32025cbd8c Start with a tibble from CSV. 2021-11-29 17:51:07 +01:00
junos 181e4f0118 Add parameters to yaml file. 
And use these in the prepare_participants_file function.
 2021-11-29 16:57:50 +01:00
junos 39bd244511 [WIP] Prepare yaml files. 
These will be used to create participants files.
 2021-11-24 19:11:19 +01:00
junos ab84109d55 Prepare a function to compile participants data. 
It combines functions from container.R
 2021-11-24 19:07:56 +01:00
junos f9863ec622 Fix small mistakes. 2021-11-24 19:01:30 +01:00
junos c1f56c61e8 Add a function to pull start and end datetimes. 2021-11-24 18:33:06 +01:00
junos 3acf6ece14 Add a function to pull device IDs. 2021-11-24 18:23:53 +01:00
junos 8b2717122d Add a function to get participants' IDs. 2021-11-24 18:05:17 +01:00
junos ed193d2290 Revert "Correct the name of a field." 
This reverts commit b335561a55.

It was actually correct.
 2021-11-17 19:16:35 +01:00
junos 24b11ea101 Force Unix style end of line. 2021-11-17 19:12:40 +01:00
junos 4829b155d5 Make config changes for minimal workflow. 2021-11-17 18:53:44 +01:00
junos b335561a55 Correct the name of a field. 2021-11-17 18:50:06 +01:00
junos fcec3e2f93 Implement the necessary functions for PSQL. 2021-11-17 18:49:25 +01:00
junos 7a1e4f7139 Add the format file copied from MySQL. 2021-11-17 18:46:16 +01:00
junos ae8ed3999f Add RPostgres to renv. 
And update its dependencies.
 2021-11-17 12:56:14 +01:00
Meng Li da633c5d08 Update change-log for v1.6.0 2021-10-18 17:03:21 -04:00
Meng Li 7f4683e0fe
Feature/screen default maxlength (#164) 
Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
 2021-10-14 09:26:06 -04:00
Meng Li 3744367aa9 Updated docs and workflow example for location features with DORYAB provider 2021-10-13 17:06:53 -04:00
Meng Li c7e8777a6e Merge branch 'feature/phone_locations_refactor' into develop 2021-09-23 18:22:11 -04:00
Meng Li f340b89c58 Temporary revert PHONE_LOCATIONS BARNETT provider to use R script 2021-09-23 18:16:13 -04:00
Meng Li a3fb718aea Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes 2021-09-23 17:40:06 -04:00
Meng Li 80522e6b7f Merge branch 'feature/phone_calls_refactor' into develop 2021-09-15 11:47:41 -04:00
Weiyu ff38e36809 Tested phone call episodes 2021-09-15 10:29:56 -04:00
Meng Li a8a178486b Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events 2021-09-15 10:28:37 -04:00
JulioV 2e553dc9e7 Add tqdm package to environment.yaml 2021-08-16 11:04:03 -04:00
Meng Li 3ac12e7dad Fix the bug of step intraday features when INCLUDE_ZERO_STEP_ROWS is False 2021-08-11 12:40:40 -04:00
JulioV 1520a1e755 v1.5.0 Update changelog and team pages 2021-08-09 18:21:58 -04:00
Weiyu 46e4425323 Updated test data for data yield feature 2021-08-09 17:56:29 -04:00
Weiyu 35eebe8a51 Bug fixed: set ratiovalidyielded mins/hours value to the range 0 to 1 2021-08-09 17:56:29 -04:00
Shirley 3c46a1c878 Adding Ian and Shirley as community contributors 2021-08-05 18:25:37 -04:00
JulioV 3e69966c91 Update error message 2021-08-04 15:33:02 -04:00
Shirley 4ddb2845a6 Update initialize_params 2021-08-04 15:33:02 -04:00
JulioV 834bd3b93d Refactor in Python of Barnett provider 
Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
 2021-08-04 15:33:02 -04:00
Weiyu c41e1f08cc Tested data yield feature 2021-08-04 11:06:31 -04:00
Weiyu 64976919e4 Tested phone accelerometer feature 2021-08-04 11:06:31 -04:00
Weiyu 7f1c502ea0 Fixed bug: Added local_segment column if no data left after filtered 2021-08-04 11:06:31 -04:00
Weiyu 2e3e433d2b Tested fitbit step summary feature 2021-07-28 10:32:16 -04:00
Weiyu 6f5a143191 Tested fitbit steps intraday feature 2021-07-28 10:32:16 -04:00
JulioV 872125fbb2
Update link to paper that used RAPIDS 2021-07-23 11:57:04 -04:00
Hannah Roberts b52059b027 Ensure date/time format is maintained 
Within the 'determine which is home' for loop, 'xx' is the midpoint of two datetime objects. When the midpoint is calculated to be midnight, only the date is returned. This can be replicated with:

mydates <- as.POSIXct("2018-01-01 00:00:00", tz = "UTC")
mydates
[1] "2018-01-01 UTC"

This results in 'hourofday' being NA as an hour cannot be found. By adding the suggested format wrapper, the time is maintained and 'hourofday' can be determined. It can then successfully be applied to the embedded if-statement within the loop.

mydates <- format(as.POSIXct("2018-01-01 00:00:00", tz = "UTC"), "%Y-%m-%d %H:%M:%S")
mydates
[1] "01-01-2018 00:00:00"
 2021-07-23 10:12:11 -04:00