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152 Commits (notes)

Author SHA1 Message Date
Primoz 0d81ad5756 Debug assignment of segments to rows 2022-10-19 13:35:04 +00:00
Primoz 7493aaa643 Small changes in cleaning scrtipt and missing vals testing. 2022-09-20 12:57:55 +00:00
Primoz 7d85f75d21 Changes in phone features NaN values script. 2022-09-16 09:03:30 +00:00
Primoz 385e21409d Changes in NaN values testing script. 2022-09-15 14:16:58 +00:00
Primoz 18002f59e1 Doryab bluetooth and locations features fill in NaN values. 2022-09-15 10:48:59 +00:00
Primoz d5ab5a0394 Writing testing scripts to determine the point of manual imputation. 2022-09-14 14:13:03 +00:00
Primoz 6ba4a66deb Squashed commit of the following: 
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Jul 20 13:49:22 2022 +0000

    Environment version change.

commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 16:10:07 2022 +0000

    Enabled cleaning for all participants + standardization files.

commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 14:14:51 2022 +0000

    Features cleaning fixes after testing. Visualization script for phone features values.

commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 09:05:14 2022 +0000

    Revert "Necessary config changes."

    This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.

commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 13:19:47 2022 +0000

    Adding cleaning function condition and cleaning functionality.

commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:51:56 2022 +0000

    Translation of the cleaning individual RAPIDS function from R to py.

commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:02:18 2022 +0000

    Necessary config changes.

commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 15:26:00 2022 +0000

    Modified snakemake rule to dynamically choose script extention.

commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 14:43:08 2022 +0000

    Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.

commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 09:49:41 2022 +0000

    gitignore: adding required files so that RAPIDS can be run successfully.

commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 08:34:19 2022 +0000

    Standardization bug fixes

commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 14 15:28:02 2022 +0000

    Seperate rules for empatica vs. nonempatica standardization.
    Parameter in config that controls the creation of standardized merged files for individual and all participants..

commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 12 14:23:03 2022 +0000

    Preparing for final csvs' standardization.

commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:47 2022 +0000

    Revert "Changes in config to be reverted."

    This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.

commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:26 2022 +0000

    Enabled standardization for rest (previously active)  phone features.
    Testing still needed.

commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 09:07:55 2022 +0000

    Enabled standardization for phone calls.
    All steps completed and tested.

commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 07:47:51 2022 +0000

    Changes in config to be reverted.

commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:24 2022 +0000

    Standardization for the rest of the features.

commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:08 2022 +0000

    README update again
 2022-07-20 13:51:22 +00:00
Primoz 5a4696c548 Misc. changes 2022-07-06 11:30:18 +00:00
Primoz 2d5d23b615 Testing files change and remove standardization from hrv sensors main files. 2022-07-06 07:35:39 +00:00
Primoz 505c3a86b9 Testing different EDA findPeaks parameters. 2022-06-30 15:15:37 +00:00
Primoz c851ab0763 Fill EDA NaN values where numPeak is zero. Other small changes. 2022-06-21 14:09:49 +00:00
Primoz a8cd16f88c Debugging eda_explorer 2022-06-16 11:32:59 +00:00
Primoz dda4554d46 Various small changes. 2022-06-15 13:57:46 +00:00
Primoz 212cf300f8 Debugging EDA signal - preliminary step for imputation. 2022-06-14 15:09:14 +00:00
primoz e1d7607de4 Extraction of additional SO features. Min/max has been changed to nsmallest/nlargest means. 2022-06-10 12:34:48 +00:00
primoz 2acf6ff9fb Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections. 2022-06-03 12:34:36 +00:00
Primoz fbf6a77dfc Small misc changes 2022-06-02 06:41:53 +00:00
Meng Li 5bad3eb8b5
Data cleaning (#166) 
* Refactor data cleaning module: move it from example workflow to main directory

* Replace NAs with 0 in selected event-based features

* Add one step to drop highly correlated features

Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
 2021-11-19 10:34:36 -05:00
Meng Li 3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider (#168) 
* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider

* Update test config files
 2021-11-18 18:35:27 -05:00
Meng Li dfa11acf87
Updated phone battery test data and results (#165) 
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
 2021-10-21 22:54:19 -04:00
Meng Li a3fb718aea Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes 2021-09-23 17:40:06 -04:00
Weiyu ff38e36809 Tested phone call episodes 2021-09-15 10:29:56 -04:00
Weiyu 46e4425323 Updated test data for data yield feature 2021-08-09 17:56:29 -04:00
Weiyu c41e1f08cc Tested data yield feature 2021-08-04 11:06:31 -04:00
Weiyu 64976919e4 Tested phone accelerometer feature 2021-08-04 11:06:31 -04:00
Weiyu 2e3e433d2b Tested fitbit step summary feature 2021-07-28 10:32:16 -04:00
Weiyu 6f5a143191 Tested fitbit steps intraday feature 2021-07-28 10:32:16 -04:00
Weiyu 5a465873c4 Tested fitbit heartrate intraday feature 2021-07-21 10:24:02 -04:00
Weiyu e9c07924fd Tested fitbit heartrate summary feature 2021-07-20 16:54:08 -04:00
JulioV 18463f5e8e Fix bug with internal test script 
Date times with a 00:00:00 would not be saved correctly for Fitbits
 2021-07-16 16:56:02 -04:00
Weiyu 2e147fb89c Finished phone message test 2021-07-07 01:22:49 -04:00
Weiyu 013425e36c Finished phone applications foreground feature test 2021-07-01 16:25:38 -04:00
JulioV 6fa1875bf3 Add app foreground episode count 2021-07-01 16:20:16 -04:00
Weiyu 9593667f38 Finished phone light test 2021-07-01 16:17:08 -04:00
Weiyu 4efc247575 Tested phone activity recognition feature 2021-06-23 19:08:14 -04:00
Weiyu c07358df70 Tested phone bluetooth feature 2021-06-23 18:56:24 -04:00
kirtirajk 4b8698a4c6 adding app_episode with the changes as mentioned in the comments 2021-06-10 14:17:56 -04:00
Weiyu a7e720e1a8 Validated phone conversation feature results 2021-06-10 10:49:22 -04:00
Weiyu ae20d22d1e validated phone wifi feature results 2021-06-10 10:49:22 -04:00
Weiyu 93622b6781 Completed phone calls test 2021-06-10 10:49:22 -04:00
Meng Li 0d6f51be8b Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs 2021-05-26 17:36:52 -04:00
Meng Li edf71e055d Add the EXCLUDE_SLEEP module for steps intraday features 2021-05-21 15:23:21 -04:00
Nikunj Goel 5e451f99b0
Added phone keyboard features including docs/tests (#134) 2021-05-21 11:45:27 -04:00
Meng Li 809845143f Test & fix bugs of sleep intraday features 2021-04-27 14:40:14 -04:00
Meng Li 7c7f34ec45 Test & fix bugs of sleep summary features 2021-04-27 14:40:14 -04:00
Weiyu 0b4704de29 Validated phone screen tests 2021-04-21 12:15:28 -04:00
JulioV 17f520d5e6 Delete android from fitbit test pid 2021-04-20 17:28:06 -04:00
JulioV 0e127e4412 Add calories features tests 2021-04-20 12:02:21 -04:00
Meng Li 20910bf1dc Remove fitbit device rows from timesegments_event file of testing module 2021-04-19 14:21:00 -04:00
Meng Li 84cca10f04 Update event segments with multi timezones for testing module 2021-04-19 13:39:44 -04:00