Commit Graph

445 Commits (master)

Author SHA1 Message Date
JulioV 57bd1a75dc Add where to start guide and update docs 2021-03-12 16:31:37 -05:00
Meng Li d529490999 Migrate fitbit features to new data stream 2021-03-12 12:38:36 -05:00
JulioV 6e898beca5 Add aware_csv 2021-03-11 19:32:11 -05:00
JulioV 2e030b377d Update minimal workflow 2021-03-11 15:22:23 -05:00
JulioV 13174b0c2a Fix a bug when fitbit data is empty 2021-03-11 14:51:16 -05:00
JulioV 2ee45995f2 Update config docs and create participant files script 2021-03-11 14:40:33 -05:00
JulioV a79997e0ac Add empatica_zip docs 2021-03-11 14:39:26 -05:00
JulioV d48194fc07 Add fitbitparsed_csv 2021-03-11 14:39:26 -05:00
JulioV b97b70e3a1 Add fitbitjson_csv 2021-03-11 14:39:26 -05:00
JulioV 470f4276af Add fitbitparsed_mysql 2021-03-11 14:39:26 -05:00
JulioV 1b0ee4bbf0 Add sleep intraday to fitbitjson_mysql 2021-03-11 14:39:20 -05:00
JulioV a420f5ef92 Add sleep summary to fitbitjson_mysql 2021-03-11 14:37:22 -05:00
Meng Li cf0afeb08d Update docs & links in config.yaml 2021-03-11 14:37:22 -05:00
Meng Li 93baff9f83 Migrate phone keyboard sensor to new data stream 2021-03-11 14:37:22 -05:00
Meng Li 35968e2fd0 Migrate phone log sensor to new data stream 2021-03-11 14:37:22 -05:00
Meng Li 091f9c048a Migrate phone apps notifications sensor to new data stream 2021-03-11 14:37:22 -05:00
Meng Li b49dab0949 Migrate phone apps crashes sensor to new data stream 2021-03-11 14:37:22 -05:00
JulioV 47e1b33816 Add hr intraday to fitbitjson_mysql 2021-03-11 14:37:22 -05:00
JulioV 47f449555a Add hr summary to fitbitjson_mysql 2021-03-11 14:37:22 -05:00
JulioV 72f6b2d621 Add steps intraday to fitbitjson_mysql 2021-03-11 14:37:22 -05:00
JulioV 9a276c1c66 Add steps summary to jsonfitbit_mysql 2021-03-11 14:37:22 -05:00
JulioV 2ea9944059 Update docs for add new data stream 2021-03-11 14:37:22 -05:00
Meng Li 13290cd444 Migrate phone wifi visible sensor to new data stream 2021-03-11 14:36:52 -05:00
Meng Li d42c6e9c91 Migrate phone wifi connected sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 4825962361 Migrate phone screen sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li bd4f647d37 Migrate phone messages sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 3a65b3864d Migrate phone locations sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 7a50a52a9d Migrate phone light sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li c1682d8cd3 Migrate phone calls sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 0e96f39599 Migrate phone bluetooth sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 6d06d2b1eb Update MUTATION structure code & docs for AR, Apps foreground, and battery sensors 2021-03-11 14:35:34 -05:00
JulioV 6970954358 Change MUTATION structure 2021-03-11 14:35:34 -05:00
Meng Li f7cf316133 Migrate phone battery sensor to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 824523e32c Migrate phone apps foreground sensor to new data stream 2021-03-11 14:35:34 -05:00
JulioV 41711fcdb7 Rename download_data add support for py containers 2021-03-11 14:35:34 -05:00
JulioV 4b33ee43ba Replace .env with credentials.yaml 2021-03-11 14:35:34 -05:00
JulioV f65e3c8b1a Migrate empatica sensors to new data stream 2021-03-11 14:35:34 -05:00
Meng Li 2eae84ff05 Add docs of AR & conversation sensors 2021-03-11 14:35:34 -05:00
JulioV fb054b539f Add support for multiple time zones 2021-03-11 14:35:34 -05:00
JulioV f53b74e280 Update docs for multiple time zones 2021-03-11 14:35:34 -05:00
JulioV 6c51c6c239 Move phone_conversation to aware_mysql stream 2021-03-11 14:35:34 -05:00
JulioV ab1a3dbf79 Move phone_activity_recognition to aware_mysql stream 2021-03-11 14:35:34 -05:00
JulioV dc11cb593d Add support for smartphone sources and schemas.
Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
2021-03-11 14:35:33 -05:00
Weiyu e417aa3a6a added verified phone screen result files 2021-03-09 18:08:38 -05:00
Meng Li fc5b5eead8 Update fitbit-sleep-intraday.md 2021-03-04 15:55:49 -05:00
Meng Li aac87311e8 Update socialjetlag feature of sleep intraday: replace bedtime with midpoint sleep 2021-03-04 15:49:25 -05:00
Meng Li 7b4598357d Update the PRICE provider's example in sleep intraday docs 2021-02-26 17:47:01 -05:00
Meng Li 46d1575ce8 Add "device_id" col to PLAIN_TEXT example of sleep intraday docs 2021-02-26 17:47:01 -05:00
Meng Li 2d5e966530 Update fitbit sleep intraday docs & config file 2021-02-26 17:47:01 -05:00
JulioV 9a49644fc6 Update docs 2021-02-26 17:47:01 -05:00
Meng Li c82f5952e6 Add Docs of fitbit sleep intraday features with PRICE provider 2021-02-26 17:47:01 -05:00
Meng Li 8377c12efb Add sleep intraday features with RAPIDS provider 2021-02-26 17:47:01 -05:00
JulioV f565ac8a11 Review doc changes 2021-02-26 17:47:01 -05:00
Meng Li d0c0f876f4 Add docs of Fitbit sleep intraday features 2021-02-26 17:47:01 -05:00
Weiyu edf741306a added raw data for battery testing to test05 and test06
Validation for phone battery feature (test 3,4,5,6)

Added test case for battery status 3 in iOS device

Set all battery level with battery status 4 to the same with the previous one, so they have no change on battery level

Marked phone battery frequency as availiable
2021-02-25 13:45:25 -05:00
JulioV aa429bef64 Update git flow to add new features 2021-02-25 13:41:55 -05:00
JulioV 724027e383 Small fixes to timeathome docs, add config validation 2021-02-24 17:49:22 -05:00
nikunjgoel95 3d6caea6c4 Added the timeathome feature using infer_home_location.py as interim file. 2021-02-24 16:57:25 -05:00
JulioV 1870f513a6 Remove unsused pngs 2021-02-23 16:27:46 -05:00
JulioV d73bfdde1f Add `config.yaml` validation documentation. 2021-02-23 16:22:14 -05:00
Weiyu 1a9bcf8e37 Initial documentary for configuration schema 2021-02-23 11:07:51 -05:00
JulioV 12fffb9c63 Set TZDIR on M1 only, update installation for M1s 2021-02-21 18:23:12 -05:00
JulioV 9668dfac7a Update docs to support Empatica 2021-02-21 17:32:41 -05:00
abhineethreddyk 407ef14925 Updated test cases docs with active tests table 2021-02-16 19:08:32 -05:00
JulioV d8813e2d04 Fix bug when any of the rows from any sensor do not belong a time segment 2021-02-09 14:51:54 -05:00
JulioV 47bd695249 Deprecate Doryab circadian movement feature until it is fixed 2021-02-03 09:46:29 -05:00
Meng Li 6e59452c34 Update mkdocs.yml and add-new-features.md 2021-02-02 18:50:20 -05:00
Meng Li b67f990816 Add new `FITBIT_DATA_YIELD` `RAPIDS` provider 2021-02-02 18:30:21 -05:00
JulioV ec1c211599 Update change log for v0.4.2 so far 2021-02-02 12:05:01 -05:00
nikunjgoel95 9b248c449d Fixing and adding MAXIMUM_ROW_DURATION. 2021-02-02 11:38:13 -05:00
nikunjgoel95 e7fc8f44f2 Removing Sampling Frequency and fixing ROG, location entropy and normalized location entropy. 2021-02-02 11:38:08 -05:00
nikunjgoel95 cc2127e72d Updated documentation for Duration. 2021-02-02 11:36:48 -05:00
nikunjgoel95 4746d7ab6c Added Observation in Doryab Feature docs. 2021-02-02 11:34:56 -05:00
JulioV 1b664d9766 Update docs/faq.md 2021-02-01 16:12:57 -05:00
ThisWei777 77991d72f1 Added two FAQs
Added FAQs for Unimplemented MAX_NO_FIELD_TYPES and Running RAPIDS on Apple Silicon M1 Mac
2021-02-01 16:12:57 -05:00
JulioV 0b87aa3b36 Fix bug when no error message was displayed for an empty `[PHONE_DATA_YIELD][SENSORS]` when resampling location data 2021-01-27 17:12:53 -05:00
ThisWei777 f1118bbf63
R 4.0.3 timezone issue (#112)
* Update docs/faq.md
2021-01-27 16:35:21 -05:00
JulioV ea6894f2ff Update change log for v0.4.0 2021-01-26 13:40:45 -05:00
JulioV eb258d874a Fix minor issues in docs 2021-01-26 13:27:53 -05:00
abhineethreddyk 8ce9059e93 Updated testing docs 2021-01-20 22:40:35 -05:00
JulioV 17f3e5d598 Update nul FAQ 2021-01-14 15:25:08 -05:00
JulioV d0fe4d4c28 Add ALL_RESAMPLED flag and accuracy limit 2021-01-14 14:34:25 -05:00
JulioV 585bf7bc5d Add code so new feature providers can be added for the new four sensors 2021-01-14 14:31:40 -05:00
JulioV 8fd1d9dc29 Add four new sensors without providers 2021-01-14 14:31:40 -05:00
JulioV 38fadbf202
Feature/doryab location clustering (#111)
* Added OPTICS -  lightweight clustering algorithm.

* Changed the error message for inconsistent parameters in CONFIG

* Removing hardcoded values and changing default EPS value in the clustering algorithm.

* Added Observation in Doryab Feature docs.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-14 14:22:51 -05:00
JulioV ee2882fe2a Modified change log 2021-01-07 16:27:29 -05:00
JulioV b7ba3c6407
Feature/location doryab fix (#109)
* Fixing the doryab location features for context of clustering.

* Fixed the wrong shifting while calculating the distance.

* Refractoring the haversine function

* Removed comments.

* Cleaning parts of the code.

* Updated the documentation for CLUSTER_ON parameter.

Co-authored-by: nikunjgoel95 <nikunjgoel2009@gmail.com>
2021-01-07 16:20:46 -05:00
JulioV 3dd0e989a7 Update Doryab location docs 2021-01-06 12:09:06 -05:00
JulioV 4926497ae2 Fix bugs in Fitbit data parsing
- Fix the script that was breaking with an empty file
- Fix the script that was breaking when start/end dates were empty
- Ambigous and nonexistent DST times are handled now
- Remove unnecessary else clause
2021-01-06 11:43:01 -05:00
JulioV b343399ffa Add libglpk40 dependency
To CI tests, dockerfile and installation

Add libglpk40 to dockerfile and installation
2021-01-05 19:24:49 -05:00
JulioV aaa9ad22a2 Update changelog 2021-01-05 18:37:21 -05:00
JulioV f6e66a43f0 Clarify in DB credential configuration that we only support MySQL 2021-01-05 18:36:55 -05:00
JulioV 9418e6e936 Update docker and linux instructions to use RSPM binary repo for for faster installation 2021-01-05 18:36:19 -05:00
JulioV 2b1f3f230c v0.3.1 2020-12-21 16:30:46 -05:00
JulioV 29e3d9bf37 - Update R and Python virtual environments
- Add GH actions CI support for tests and docker
- Add release and test badges to README
2020-12-20 18:35:54 -05:00
JulioV 57d51378a3 Merge branch 'hotfix/v0.2.6' into develop 2020-12-20 17:04:08 -05:00
JulioV 67e0caa2fe Fix old versions banner on nested pages 2020-12-20 17:03:11 -05:00
JulioV d39b700b5f Update git flow docs, set keyboard flag to false 2020-12-20 13:55:41 -05:00
JulioV ac4526df5d Update docs, add renv and conda cache,& release CI 2020-12-20 13:54:31 -05:00
JulioV 9bf6042ea9 Merge branch 'hotfix/v0.2.5' into develop 2020-12-18 22:47:12 -05:00
JulioV d352b2c607 Fix docs deploy typo 2020-12-18 22:46:30 -05:00
JulioV 9e8178edbd Merge branch 'hotfix/v0.2.4' into develop 2020-12-18 22:36:25 -05:00
JulioV 265163d228 Fix broken links in landing page and docs deploy 2020-12-18 22:35:10 -05:00
JulioV 079547e60d Update virtual envs 2020-12-18 14:06:28 -05:00
JulioV 1b65f11b89 Fix participant IDS in the example analysis workflow 2020-12-18 11:27:04 -05:00
JulioV 7f4294d016 Fix readme link to docs 2020-12-12 17:51:01 -05:00
JulioV 3867f9c0d8 Fix old version banner 2020-12-12 17:36:15 -05:00
JulioV 1359acf5fd Update git flow 2020-12-12 17:13:04 -05:00
JulioV 63202c62cc Fix BT doryab bug and update change log 2020-12-12 17:11:48 -05:00
JulioV 5bd1bfe856 Add new bluetooth doryab features and deprecate rapids provider 2020-12-12 17:01:46 -05:00
JulioV 266dd28d02 Add bluetooth doryab features 2020-12-11 12:03:22 -05:00
JulioV 9ff75b10ba Update faq 2020-12-09 18:54:49 -05:00
JulioV a7269dab55 Fix Configuration broken link 2020-12-08 15:31:34 -05:00
JulioV e131983967 Add dev/tag triggered docs and git flow 2020-12-07 21:08:14 -05:00
Meng Li 17a3414987 Update analysis.md 2020-12-07 10:56:37 -05:00
JulioV a035b785f4 Small fixes to the analysis example 2020-12-04 16:46:06 -05:00
JulioV 73f15d44fb Update landing page 2020-12-04 16:33:55 -05:00
JulioV 621885ee86 Add change log to docs 2020-12-04 16:21:22 -05:00
JulioV fdd61521f8 Add visualization docs 2020-12-04 16:19:25 -05:00
JulioV a2a532ed81 Adjust figure width 2020-12-04 15:33:30 -05:00
JulioV 9a02e93b25 Swap RMySQL for RMariaDB 2020-12-04 14:57:13 -05:00
JulioV 5baaa94092 Update migrating docs 2020-12-03 21:04:20 -05:00
JulioV 3560217e3b Update to analysis workflow docs 2020-12-03 19:22:16 -05:00
JulioV a3330e703b Add migration docs 2020-12-03 18:57:43 -05:00
JulioV 1e9e83f2f3 Small fix minimal example 2020-12-03 15:51:59 -05:00
JulioV 7ded397378 Add analysis workflow example 2020-12-03 12:50:28 -05:00
JulioV fca0528e53 Update file structure docs 2020-12-03 11:50:54 -05:00
JulioV 258b60883c Add overnight time segment example 2020-12-02 18:49:59 -05:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
JulioV e0f43d581c Add day segment examples 2020-12-02 17:49:44 -05:00
JulioV f4aeb3bba9 Rename configuration page 2020-12-02 17:27:05 -05:00
JulioV c24cba8679 Event segments' device id can be one of any assigned to a participant 2020-12-02 17:17:55 -05:00
Meng Li 8daa5ef20e Update add-new-features.md 2020-11-30 15:43:03 -05:00
JulioV 63215b3c70 Add code of conduct 2020-11-30 13:51:05 -05:00
JulioV 5f51c94ac6 Separate device data configuration and update docs 2020-11-25 19:42:11 -05:00
JulioV c734c8b415 Update fitbit docs 2020-11-25 18:24:43 -05:00
JulioV 6562d1ef2a Update phone data yield docs 2020-11-25 17:54:00 -05:00
JulioV ced3305ddb Update R feature scripts to add sensor and provider names automatically 2020-11-25 14:49:42 -05:00
Meng Li c25467e7af Update Fitbit docs: sleep summary assumptions 2020-11-23 18:28:15 -05:00
Meng Li ba3b50f003 Update Fitbit docs: sleep summary 2020-11-23 16:52:23 -05:00
Meng Li ca8c815446 Update Fitbit docs: HR & Steps 2020-11-19 12:30:16 -05:00
JulioV 17da2ff7f2 Fix bug when banner displays even on the latest URL 2020-11-18 20:04:23 -05:00
JulioV 27564bab98 Fix banner style 2020-11-18 19:25:43 -05:00
JulioV a10c8e24aa Fix banner for old versions of the docs 2020-11-18 19:14:16 -05:00
JulioV eedbbc757c Second banner test 2020-11-18 18:41:48 -05:00
JulioV 87e6b2258a Test for old docs banner 2020-11-18 18:30:32 -05:00
JulioV 2870f39f85 Update docs 2020-11-18 12:33:26 -05:00
JulioV 895b70719e Update minimal example and fix create participants bug 2020-11-17 17:27:48 -05:00
JulioV d1296213dc Add warning 2020-11-16 19:11:13 -05:00
JulioV 77c27f6368 Fix event day segments docs 2020-11-12 17:35:57 -05:00