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59 Commits (imputation_and_cleaning)

Author SHA1 Message Date
Primoz 0d81ad5756 Debug assignment of segments to rows 2022-10-19 13:35:04 +00:00
Primoz 7493aaa643 Small changes in cleaning scrtipt and missing vals testing. 2022-09-20 12:57:55 +00:00
Primoz 7d85f75d21 Changes in phone features NaN values script. 2022-09-16 09:03:30 +00:00
Primoz 385e21409d Changes in NaN values testing script. 2022-09-15 14:16:58 +00:00
Primoz 18002f59e1 Doryab bluetooth and locations features fill in NaN values. 2022-09-15 10:48:59 +00:00
Primoz d5ab5a0394 Writing testing scripts to determine the point of manual imputation. 2022-09-14 14:13:03 +00:00
Primoz 6ba4a66deb Squashed commit of the following: 
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Jul 20 13:49:22 2022 +0000

    Environment version change.

commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 16:10:07 2022 +0000

    Enabled cleaning for all participants + standardization files.

commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 14:14:51 2022 +0000

    Features cleaning fixes after testing. Visualization script for phone features values.

commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 09:05:14 2022 +0000

    Revert "Necessary config changes."

    This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.

commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 13:19:47 2022 +0000

    Adding cleaning function condition and cleaning functionality.

commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:51:56 2022 +0000

    Translation of the cleaning individual RAPIDS function from R to py.

commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:02:18 2022 +0000

    Necessary config changes.

commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 15:26:00 2022 +0000

    Modified snakemake rule to dynamically choose script extention.

commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 14:43:08 2022 +0000

    Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.

commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 09:49:41 2022 +0000

    gitignore: adding required files so that RAPIDS can be run successfully.

commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 08:34:19 2022 +0000

    Standardization bug fixes

commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 14 15:28:02 2022 +0000

    Seperate rules for empatica vs. nonempatica standardization.
    Parameter in config that controls the creation of standardized merged files for individual and all participants..

commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 12 14:23:03 2022 +0000

    Preparing for final csvs' standardization.

commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:47 2022 +0000

    Revert "Changes in config to be reverted."

    This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.

commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:26 2022 +0000

    Enabled standardization for rest (previously active)  phone features.
    Testing still needed.

commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 09:07:55 2022 +0000

    Enabled standardization for phone calls.
    All steps completed and tested.

commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 07:47:51 2022 +0000

    Changes in config to be reverted.

commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:24 2022 +0000

    Standardization for the rest of the features.

commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:08 2022 +0000

    README update again
 2022-07-20 13:51:22 +00:00
Primoz 5a4696c548 Misc. changes 2022-07-06 11:30:18 +00:00
Primoz 2d5d23b615 Testing files change and remove standardization from hrv sensors main files. 2022-07-06 07:35:39 +00:00
Primoz 505c3a86b9 Testing different EDA findPeaks parameters. 2022-06-30 15:15:37 +00:00
Primoz c851ab0763 Fill EDA NaN values where numPeak is zero. Other small changes. 2022-06-21 14:09:49 +00:00
Primoz a8cd16f88c Debugging eda_explorer 2022-06-16 11:32:59 +00:00
Primoz dda4554d46 Various small changes. 2022-06-15 13:57:46 +00:00
Primoz 212cf300f8 Debugging EDA signal - preliminary step for imputation. 2022-06-14 15:09:14 +00:00
primoz e1d7607de4 Extraction of additional SO features. Min/max has been changed to nsmallest/nlargest means. 2022-06-10 12:34:48 +00:00
primoz 2acf6ff9fb Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections. 2022-06-03 12:34:36 +00:00
Primoz fbf6a77dfc Small misc changes 2022-06-02 06:41:53 +00:00
JulioV 18463f5e8e Fix bug with internal test script 
Date times with a 00:00:00 would not be saved correctly for Fitbits
 2021-07-16 16:56:02 -04:00
Weiyu 0b4704de29 Validated phone screen tests 2021-04-21 12:15:28 -04:00
JulioV 17f520d5e6 Delete android from fitbit test pid 2021-04-20 17:28:06 -04:00
JulioV 0e127e4412 Add calories features tests 2021-04-20 12:02:21 -04:00
Meng Li 305cc9d4ad Update testing module for Fitbit 2021-04-16 18:32:20 -04:00
Meng Li 8385582e13 Refactor tests module 2021-04-14 20:52:45 -04:00
JulioV aafe35107d Fix missing pid files directory 2021-04-08 16:50:18 -04:00
Weiyu 502c1c36e2 documented phone_battery_test and added event tests 2021-04-08 16:50:18 -04:00
JulioV 4528ab3641 Replace SRC LANGUAGE and FOLDER with SCRIPT 2021-03-14 22:14:13 -04:00
JulioV 3d4a04effe Refactor testing 2021-03-14 00:09:08 -05:00
abhineethreddyk c59d4a66eb Migrated testing from Travis to Github Actions and updated config and Snakemake files in the testing directory - part 1 2020-12-14 22:15:39 -05:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
abhineethreddyk 6f7f88aac3 Updated Snakemake, run_tests.sh and testing_config.yaml in tests directory 2020-10-26 18:18:11 -04:00
abhineethreddyk 2a512a3d46 Fixed a bug in run_tests.sh and updated testing_config.yaml files 2020-10-21 17:28:52 -04:00
abhineethreddyk 042cd14c62 Updated Snakemake, run_tests.sh, raw sensor data & feature data filenames, and participant files' structure in the tests directory to make them consistent with the recent updates to RAPIDS 2020-10-21 16:46:40 -04:00
abhineethreddyk 7e24c6735b Updated tests/scripts/utils.py 2020-10-19 20:39:53 -04:00
kaguillera a7f2909645 Fix Travis false passing error 1.2 2020-10-09 11:51:36 -04:00
kaguillera e8b9378a89 Trying to stop travis at first FAIL 1.0 2020-10-08 17:02:35 -04:00
kaguillera 01ab59a3b6 Updated bluetooth testing & call testing for freq 2020-10-07 16:23:27 -04:00
kaguillera 2a752b6aa7 Minor structure changes for frequnecy testing 2020-09-30 11:57:12 -04:00
kaguillera 0469f78210 Should fix travis failure 2020-09-24 17:50:37 -04:00
kaguillera 95c8a413a5 fixing run_test.sh bug 1.0 2020-09-24 17:37:07 -04:00
kaguillera f4206abc4b Updated the run_test.sh script 2020-09-24 17:19:52 -04:00
kaguillera 09d373a31b Minor script correction for testing 2020-09-18 19:30:45 -04:00
kaguillera ca14eba8e1 Initial testing restructure for 30mins segments 2020-09-18 19:14:07 -04:00
kaguillera 5d3e6efc41 New Bluetooth Testing 2020-09-03 12:04:29 -04:00
kaguillera f5ea5c3116 Conversation testing, testing_docs & minor bugfix 2020-08-13 18:36:38 -04:00
kaguillera 1ad8bb0365 Add testing, test docs and minor fixes for AR 2020-08-13 13:41:45 -04:00
JulioV 50461e5ee1 FIx name change of preprocessing.smk in test script 2020-08-11 19:04:50 -04:00
JulioV b83f8ead44 Refactor snakefiles to smk files and create common.smk 2020-08-11 18:45:50 -04:00
JulioV 1dec6764f8 Update test script 2020-08-11 18:03:52 -04:00
kaguillera 639e54a247 Fix Travis due to preprocessing updates 2020-08-04 18:39:29 -04:00
kaguillera dbc51de4e3 Updated WIFI testing, bugfix and docs 2020-07-29 14:14:47 -04:00