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FIx name change of preprocessing.smk in test script

pull/95/head
JulioV 2020-08-11 19:04:50 -04:00
parent 162ffd019c
commit 50461e5ee1
1 changed files with 4 additions and 4 deletions
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8
tests/scripts/run_tests.sh
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@ -16,11 +16,11 @@ cp tests/data/external/* data/external
# Uncomment the section below to backup snakemake file when testing locally
# echo Backing up preprocessing...
# cp rules/preprocessing.snakefile bak
# cp rules/preprocessing.smk bak
echo Disabling downloading of dataset...
sed -e '27,39 s/^/#/' -e 's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.snakefile > tmp
cp tmp rules/preprocessing.snakefile
sed -e '27,39 s/^/#/' -e 's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.smk > tmp
cp tmp rules/preprocessing.smk
echo Running RAPIDS Pipeline on testdata...
snakemake --profile tests/settings
@ -30,5 +30,5 @@ python -m unittest discover tests/scripts/ -v
# Uncomment to return snakemake back to the original version when testing locally
# echo Cleaning up...
# mv bak rules/preprocessing.snakefile
# mv bak rules/preprocessing.smk
# rm tmp