Commit Graph

255 Commits (imputation_and_cleaning)

Author SHA1 Message Date
Primoz b92a3aa37a Remove unwanted output or other error producing code. 2022-10-25 15:25:22 +00:00
Primoz 0d81ad5756 Debug assignment of segments to rows 2022-10-19 13:35:04 +00:00
Primoz f088e9586f Handle empty ACC.csv 2022-08-22 14:20:47 +00:00
Primoz 0aa0e82673 Handle empty Empatica csv files. 2022-08-22 14:18:12 +00:00
Primoz 5a777ac79f Working version that integrates both phone and empatica feature calculations. 2022-07-07 15:00:47 +00:00
Primoz 0425403951 Merge branch 'master' of https://repo.ijs.si/junoslukan/rapids 2022-07-06 11:53:31 +00:00
Primoz 887fd7dc72 Merge branch 'empatica_calculating_features' 2022-07-06 11:53:21 +00:00
primoz 2acf6ff9fb Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections. 2022-06-03 12:34:36 +00:00
primoz d300f0f8f0 Fixed RAPIDS bug: error when IBI.csv is empty. 2022-06-02 11:43:49 +00:00
Primoz 5532043b1f Patching IBI with BVP - completed. 2022-05-25 19:39:47 +00:00
Primoz bb62497ba6 Patching IBI with BVP - selecting appropriate pipeline entry point. WIP 2022-05-24 11:07:18 +00:00
Primoz 66451160e9 Calculating HRV features with IBI.csv. 2022-04-20 10:44:51 +00:00
junos c05b047c2d Correct outstanding baseline feature mistake. 2022-04-13 17:05:16 +02:00
junos 144f0d0dcf Account for missing baseline data. 2022-04-13 14:56:28 +02:00
junos ed5314aa98 Merge remote-tracking branch 'origin/master' 2022-04-12 17:27:25 +02:00
junos 4ad261fae5 Rename baseline features AGAIN.
Correct other mistakes.
2022-04-12 16:55:01 +02:00
junos d4a4bbbff0 Remove unused columns. 2022-03-09 17:58:36 +01:00
junos 42d62f16d0 Add RAPIDS mandatory columns for ESM. 2022-03-09 17:31:37 +01:00
junos 2bef86b1da Add a format for ESM and add to config. 2022-03-08 15:43:25 +01:00
junos d8e9a309f7 Rename features and write baseline_interim. 2022-03-08 15:10:36 +01:00
junos a3a4f04ffe Setting with : produces NaNs. 2022-03-01 12:02:57 +01:00
junos aedb8b6785 Write questionnaire data to data/interim. 2022-03-01 12:02:36 +01:00
junos b5a6317f4b Calculate JCQ control and demand control ratio.
Include norms and corresponding quartile.
2022-02-28 18:51:47 +01:00
junos 2fed962644 Calculate JCQ demand score.
Hardcode question IDs to be reversed.
2022-02-28 18:30:41 +01:00
junos 30ac8b1cd5 Start calculating demand control features. 2022-02-23 19:08:10 +01:00
junos 9a74e74d08 Add the baseline features rule to snakefile.
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
junos 07da6be398 Add age, gender, and language as features.
Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
junos 176367631b Prepare baseline feature rule. 2022-02-23 11:09:33 +01:00
junos bf9c764c97 Split baseline data to participants.
And some csv I/O settings.
2022-02-04 18:37:57 +01:00
junos 16e608db74 First merge baseline datasets. 2022-02-04 18:21:42 +01:00
junos 204f6f50b0 Read the relevant files. 2022-02-04 18:06:02 +01:00
junos 685ed6a546 Set up demographic data download. 2022-02-04 17:37:00 +01:00
Sam 10e896ca1d
Add data stream for AWARE Micro server (#173)
* Add data stream for AWARE Micro server

* Fix one documentation typo and one ommission
2022-01-27 10:47:50 -05:00
junos afa3b8546f Mutate data in an R script.
The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
2022-01-26 16:34:19 +01:00
Sam 8ae26fb845
Fixes issue where 'duration' in the 'ios_calls' dataframe is seen as a character type. (#171) 2022-01-18 10:15:53 -05:00
junos b17a7eff1a Deal with inexplicable snakemake failure. 2022-01-07 18:11:38 +01:00
junos e1499a5ae2 Account for missing device_ids. 2021-12-15 20:41:28 +01:00
junos 6f451e05ac Bring back application_name.
This column still needs to be in the data, so add it in app_add_name.py.
Later, join categories by package hash.
2021-12-15 12:58:27 +01:00
junos 4485c4c95e Delete columns we don't have.
Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
junos 37b3460b76 Use Empatica wristband numbers as provided in CSV. 2021-12-01 17:20:57 +01:00
junos 22f9e0722d Start preparing the true usernames CSV file. 2021-12-01 11:29:22 +01:00
junos 0be4cd5a8f Remove unnecessary library. 2021-11-30 17:08:07 +01:00
junos 04ad2d0b81 Source specific container script.
It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
junos da5ff0f36e Correct small errors in settings. 2021-11-29 18:04:06 +01:00
junos 35d9779026 Prepare the tibble in requested format.
Write it to a CSV file.
2021-11-29 17:54:16 +01:00
junos 32025cbd8c Start with a tibble from CSV. 2021-11-29 17:51:07 +01:00
junos 181e4f0118 Add parameters to yaml file.
And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
junos ab84109d55 Prepare a function to compile participants data.
It combines functions from container.R
2021-11-24 19:07:56 +01:00
junos f9863ec622 Fix small mistakes. 2021-11-24 19:01:30 +01:00
junos c1f56c61e8 Add a function to pull start and end datetimes. 2021-11-24 18:33:06 +01:00