6ba4a66deb
Squashed commit of the following:
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commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Jul 20 13:49:22 2022 +0000
Environment version change.
commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 16:10:07 2022 +0000
Enabled cleaning for all participants + standardization files.
commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 14:14:51 2022 +0000
Features cleaning fixes after testing. Visualization script for phone features values.
commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 09:05:14 2022 +0000
Revert "Necessary config changes."
This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.
commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 13:19:47 2022 +0000
Adding cleaning function condition and cleaning functionality.
commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:51:56 2022 +0000
Translation of the cleaning individual RAPIDS function from R to py.
commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:02:18 2022 +0000
Necessary config changes.
commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 15:26:00 2022 +0000
Modified snakemake rule to dynamically choose script extention.
commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 14:43:08 2022 +0000
Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.
commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 09:49:41 2022 +0000
gitignore: adding required files so that RAPIDS can be run successfully.
commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 08:34:19 2022 +0000
Standardization bug fixes
commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 14 15:28:02 2022 +0000
Seperate rules for empatica vs. nonempatica standardization.
Parameter in config that controls the creation of standardized merged files for individual and all participants..
commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 12 14:23:03 2022 +0000
Preparing for final csvs' standardization.
commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:47 2022 +0000
Revert "Changes in config to be reverted."
This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.
commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:26 2022 +0000
Enabled standardization for rest (previously active) phone features.
Testing still needed.
commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 09:07:55 2022 +0000
Enabled standardization for phone calls.
All steps completed and tested.
commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 07:47:51 2022 +0000
Changes in config to be reverted.
commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:24 2022 +0000
Standardization for the rest of the features.
commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:08 2022 +0000
README update again
2022-07-20 13:51:22 +00:00
5a4696c548
Misc. changes
2022-07-06 11:30:18 +00:00
2d5d23b615
Testing files change and remove standardization from hrv sensors main files.
2022-07-06 07:35:39 +00:00
505c3a86b9
Testing different EDA findPeaks parameters.
2022-06-30 15:15:37 +00:00
c851ab0763
Fill EDA NaN values where numPeak is zero. Other small changes.
2022-06-21 14:09:49 +00:00
a8cd16f88c
Debugging eda_explorer
2022-06-16 11:32:59 +00:00
dda4554d46
Various small changes.
2022-06-15 13:57:46 +00:00
212cf300f8
Debugging EDA signal - preliminary step for imputation.
2022-06-14 15:09:14 +00:00
e1d7607de4
Extraction of additional SO features. Min/max has been changed to nsmallest/nlargest means.
2022-06-10 12:34:48 +00:00
2acf6ff9fb
Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections.
2022-06-03 12:34:36 +00:00
fbf6a77dfc
Small misc changes
2022-06-02 06:41:53 +00:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
dfa11acf87
Updated phone battery test data and results ( #165 )
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Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-10-21 22:54:19 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
ff38e36809
Tested phone call episodes
2021-09-15 10:29:56 -04:00
46e4425323
Updated test data for data yield feature
2021-08-09 17:56:29 -04:00
c41e1f08cc
Tested data yield feature
2021-08-04 11:06:31 -04:00
64976919e4
Tested phone accelerometer feature
2021-08-04 11:06:31 -04:00
2e3e433d2b
Tested fitbit step summary feature
2021-07-28 10:32:16 -04:00
6f5a143191
Tested fitbit steps intraday feature
2021-07-28 10:32:16 -04:00
5a465873c4
Tested fitbit heartrate intraday feature
2021-07-21 10:24:02 -04:00
e9c07924fd
Tested fitbit heartrate summary feature
2021-07-20 16:54:08 -04:00
18463f5e8e
Fix bug with internal test script
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Date times with a 00:00:00 would not be saved correctly for Fitbits
2021-07-16 16:56:02 -04:00
2e147fb89c
Finished phone message test
2021-07-07 01:22:49 -04:00
013425e36c
Finished phone applications foreground feature test
2021-07-01 16:25:38 -04:00
6fa1875bf3
Add app foreground episode count
2021-07-01 16:20:16 -04:00
9593667f38
Finished phone light test
2021-07-01 16:17:08 -04:00
4efc247575
Tested phone activity recognition feature
2021-06-23 19:08:14 -04:00
c07358df70
Tested phone bluetooth feature
2021-06-23 18:56:24 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
a7e720e1a8
Validated phone conversation feature results
2021-06-10 10:49:22 -04:00
ae20d22d1e
validated phone wifi feature results
2021-06-10 10:49:22 -04:00
93622b6781
Completed phone calls test
2021-06-10 10:49:22 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
5e451f99b0
Added phone keyboard features including docs/tests ( #134 )
2021-05-21 11:45:27 -04:00
809845143f
Test & fix bugs of sleep intraday features
2021-04-27 14:40:14 -04:00
7c7f34ec45
Test & fix bugs of sleep summary features
2021-04-27 14:40:14 -04:00
0b4704de29
Validated phone screen tests
2021-04-21 12:15:28 -04:00
17f520d5e6
Delete android from fitbit test pid
2021-04-20 17:28:06 -04:00
0e127e4412
Add calories features tests
2021-04-20 12:02:21 -04:00
20910bf1dc
Remove fitbit device rows from timesegments_event file of testing module
2021-04-19 14:21:00 -04:00
84cca10f04
Update event segments with multi timezones for testing module
2021-04-19 13:39:44 -04:00
305cc9d4ad
Update testing module for Fitbit
2021-04-16 18:32:20 -04:00
5d732a45ec
Revert tests module's sleep config
2021-04-16 15:25:33 -04:00
59c3e367ff
Add empty folder for tests module
2021-04-14 21:02:17 -04:00
8385582e13
Refactor tests module
2021-04-14 20:52:45 -04:00
aafe35107d
Fix missing pid files directory
2021-04-08 16:50:18 -04:00
415ec4a716
reformated test cases and updated the test doc
2021-04-08 16:50:18 -04:00
Primoz
Meng Li
Weiyu
JulioV
kirtirajk
Nikunj Goel