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1280 Commits (ed5314aa98accac305560f38fc1360ab0407e4bf)

Author SHA1 Message Date
junos ba7c3e620b Merge branch 'master' into run_test_participant 2022-03-01 12:03:14 +01:00
junos a3a4f04ffe Setting with : produces NaNs. 2022-03-01 12:02:57 +01:00
junos aedb8b6785 Write questionnaire data to data/interim. 2022-03-01 12:02:36 +01:00
junos 631581cc8a Merge branch 'master' into run_test_participant 2022-03-01 11:42:19 +01:00
junos d3ebfeeabd Write questionnaire data to data/interim. 2022-03-01 11:42:08 +01:00
junos 70e077f6ab Merge branch 'master' into run_test_participant 2022-03-01 11:40:17 +01:00
junos f13a91044d Write questionnaire data to data/interim. 2022-03-01 11:39:58 +01:00
junos b5a6317f4b Calculate JCQ control and demand control ratio. 
Include norms and corresponding quartile.
 2022-02-28 18:51:47 +01:00
junos 2fed962644 Calculate JCQ demand score. 
Hardcode question IDs to be reversed.
 2022-02-28 18:30:41 +01:00
junos 30ac8b1cd5 Start calculating demand control features. 2022-02-23 19:08:10 +01:00
junos 9a74e74d08 Add the baseline features rule to snakefile. 
Correct age calculation for a single value instead of dataframe.
 2022-02-23 18:15:26 +01:00
junos 43e5ac7918 Merge branch 'master' into run_test_participant 2022-02-23 18:06:07 +01:00
junos 07da6be398 Add age, gender, and language as features. 
Move calculation of age from merge_baseline_data.py to baseline_features.py.
 2022-02-23 18:05:23 +01:00
junos c801f66533 Retain a single participant ID. 
Do not plot heatmaps as this is bugged.
 2022-02-23 11:10:54 +01:00
junos 176367631b Prepare baseline feature rule. 2022-02-23 11:09:33 +01:00
Meng Li 28e580e597 Update change-log for v1.8.0 2022-02-10 15:05:55 -05:00
junos bf9c764c97 Split baseline data to participants. 
And some csv I/O settings.
 2022-02-04 18:37:57 +01:00
junos 16e608db74 First merge baseline datasets. 2022-02-04 18:21:42 +01:00
junos 204f6f50b0 Read the relevant files. 2022-02-04 18:06:02 +01:00
junos 685ed6a546 Set up demographic data download. 2022-02-04 17:37:00 +01:00
junos ffa7a30575 Make place for STRAW models. 2022-02-04 17:25:24 +01:00
Meng Li 463ac0a2aa
Fix bug#169 (#174) 2022-01-27 11:27:32 -05:00
Sam 10e896ca1d
Add data stream for AWARE Micro server (#173) 
* Add data stream for AWARE Micro server

* Fix one documentation typo and one ommission
 2022-01-27 10:47:50 -05:00
junos afa3b8546f Mutate data in an R script. 
The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
 2022-01-26 16:34:19 +01:00
junos 1efb8e3112 Clean features across participants. 
Explore the best linear regression feature.
 2022-01-19 13:41:09 +01:00
Sam e5dbbfce44
Avoid NA problem in barnett location evaluation (#172) 
* Avoid occasional issue where does_not_span evaluates to NA, which breaks the if()

* Restored original warning
 2022-01-18 10:16:37 -05:00
Sam 8ae26fb845
Fixes issue where 'duration' in the 'ios_calls' dataframe is seen as a character type. (#171) 2022-01-18 10:15:53 -05:00
junos b17a7eff1a Deal with inexplicable snakemake failure. 2022-01-07 18:11:38 +01:00
junos 2fb068cb8b Do not calculate accelerometer features. 
Add data cleaning.
 2022-01-07 12:20:51 +01:00
junos e1499a5ae2 Account for missing device_ids. 2021-12-15 20:41:28 +01:00
junos b29f902915 Look into ESM table for device_id. 2021-12-15 20:18:12 +01:00
junos c03ee788f6 Add missing dependencies for caret and corrr. 2021-12-15 19:26:16 +01:00
junos 5a9252e46e Merge remote-tracking branch 'origin/master' 2021-12-15 18:32:36 +01:00
junos e5cc02501f Set the timezone.csv path in config. 
Take into account that TZCODES_FILE can be created with a rule.
 2021-12-15 18:09:30 +01:00
junos 352598f3da Use absolute path to avoid RuleException. 2021-12-15 17:27:13 +01:00
junos 15653b6e70 Add forgotten line for hashed app names in config. 2021-12-15 17:26:54 +01:00
junos a66a7d0cc3 Keep track of warning messages. 
These are not runtime errors, but might still indicate a problem.
 2021-12-15 16:19:29 +01:00
junos 70cada8bb8 Consider a subset of columns when dropping. 2021-12-15 16:14:33 +01:00
junos d2ed73dccf Debug ValueError for index. 
See exploration/debug_heatmap.py for illustration.
 2021-12-15 16:03:04 +01:00
junos 6f451e05ac Bring back application_name. 
This column still needs to be in the data, so add it in app_add_name.py.
Later, join categories by package hash.
 2021-12-15 12:58:27 +01:00
junos 4485c4c95e Delete columns we don't have. 
Rename light table.
Correct timesegments.
 2021-12-08 20:02:47 +01:00
junos 633384c6a9 Use all available sensors for PHONE_YIELD. 2021-12-08 19:04:19 +01:00
junos 8e2222f307 Bring back deleted lines which are required. 2021-12-08 18:59:10 +01:00
junos 712ff74898 Set table names and calculate all relevant features. 2021-12-08 18:37:34 +01:00
junos 1f54195437 Configure timezone file to be created automatically. 2021-12-08 18:21:29 +01:00
junos 2b52f686b3 Define daily segments. 2021-12-08 18:20:22 +01:00
junos 22513415e9 Do not ask for specific patch numbers of libraries! 2021-12-03 14:38:25 +01:00
junos 0b8a493ff2 Incorporate mulitple timezones into RAPIDS. 2021-12-01 18:20:27 +01:00
junos f0d29d0d1a Incorporate DB query for usernames into snakemake workflow. 2021-12-01 18:14:27 +01:00
junos 37b3460b76 Use Empatica wristband numbers as provided in CSV. 2021-12-01 17:20:57 +01:00