e84c35a36a
Remove unnecessary parameters from preprocess_esm.
...
And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
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It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
cb116100dd
Move preprocessing to features.
2022-03-16 17:06:42 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
834bd3b93d
Refactor in Python of Barnett provider
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Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
9687081fbe
Refactor the rule phone_locations_add_doryab_extra_columns
2021-05-28 09:48:36 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
6c51c6c239
Move phone_conversation to aware_mysql stream
2021-03-11 14:35:34 -05:00
ab1a3dbf79
Move phone_activity_recognition to aware_mysql stream
2021-03-11 14:35:34 -05:00
8377c12efb
Add sleep intraday features with RAPIDS provider
2021-02-26 17:47:01 -05:00
3d6caea6c4
Added the timeathome feature using infer_home_location.py as interim file.
2021-02-24 16:57:25 -05:00
8c726f5d4f
Start empatica support
2021-02-21 17:32:41 -05:00
b67f990816
Add new `FITBIT_DATA_YIELD` `RAPIDS` provider
2021-02-02 18:30:21 -05:00
585bf7bc5d
Add code so new feature providers can be added for the new four sensors
2021-01-14 14:31:40 -05:00
51c7739bfc
Revert "Start support for phone_keyboard"
...
This reverts commit dd95b4f941
2020-12-20 16:29:40 -05:00
dd95b4f941
Start support for phone_keyboard
2020-12-14 13:42:22 -05:00
614e759551
Refactor day segments to time segments
2020-12-02 18:41:03 -05:00
b4a512faf3
Add analysis example workflow
2020-11-25 16:34:05 -05:00
f02ca2624d
Add phone yield sensor
2020-11-24 19:12:16 -05:00
deba6b9e4f
Update sleep summary features for segments
2020-11-23 12:01:00 -05:00
a71efd6b85
Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY
2020-11-11 21:16:48 -05:00
9fc36f67e2
Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY
2020-11-11 17:27:46 -05:00
82873c285d
Make sure feature rules of all sensors support both Python and R scripts
2020-11-04 14:05:25 -05:00
39632c66f5
Update steps features for segments
2020-10-30 18:57:04 -04:00
ed7585c2bf
Update heartrate features for segments
2020-10-27 17:55:57 -04:00
234588c94d
Expose episode threshold between rows parameter
2020-10-26 15:28:19 -04:00
c266f6dd10
Update participant files structure and fitbit download rule
2020-10-20 19:12:01 -04:00
24bf62a7ab
Update file names
2020-10-19 15:07:12 -04:00
junos
Meng Li
JulioV
kirtirajk
nikunjgoel95