d300f0f8f0
Fixed RAPIDS bug: error when IBI.csv is empty.
2022-06-02 11:43:49 +00:00
fbf6a77dfc
Small misc changes
2022-06-02 06:41:53 +00:00
bb62497ba6
Patching IBI with BVP - selecting appropriate pipeline entry point. WIP
2022-05-24 11:07:18 +00:00
2a8f58f5c8
Patching IBI with BVP. WIP
2022-05-20 13:18:45 +00:00
6864cfe775
Changes after thorough testing with available data.
2022-05-13 13:35:34 +00:00
c1564f0cae
Changed wrapper method calculate_feature to its newest version (for TEMP and ACC).
2022-05-11 14:21:21 +00:00
31e36e7400
Alternating Second order and full segment features corresponding to config settings.
2022-05-11 08:50:15 +00:00
9cf9e1fe14
Testing and modifying the code with different E4 data.
2022-05-10 11:36:49 +00:00
f62a1302dd
Cr-features corrections for ACC and TEMP sensors
2022-05-09 11:01:52 +00:00
5638367999
Implementation of the second order features.
2022-04-25 13:07:03 +00:00
66451160e9
Calculating HRV features with IBI.csv.
2022-04-20 10:44:51 +00:00
8c8fe1fec7
Modifications, mostly imports, after changes in cr-features module.
2022-04-19 13:24:46 +00:00
075c64d1e5
HRV: changed wrapper calcFeat method with specialized one.
2022-04-14 11:51:53 +00:00
3c058e4463
Add option to calculate features within windows and store it in CSV (all sensors).
2022-04-13 13:18:23 +00:00
74cf4ada1c
Cr-feat window length for all empaticas sensors.
2022-04-12 14:00:44 +00:00
1c42347b9b
Small changes.
2022-04-04 12:19:33 +00:00
c050174ca3
Various minimal changes.
2022-03-31 09:16:00 +00:00
a357138f6e
Added CF for HRV and shortened test data
2022-03-30 15:01:24 +00:00
ab0b9227d7
Added ACC calculated features and shorter version of ACC data.
2022-03-29 09:41:51 +00:00
8b76c96e47
Cleaning existing CF mains' and preparing src script for ACC.
2022-03-28 14:18:29 +00:00
393dab72f5
Added components for the temperature features extraction.
2022-03-28 12:37:02 +00:00
191e53e543
Added cf provider for EDA feature processing.
2022-03-23 15:13:53 +00:00
d3a3f01f29
Preparation for the EDA features integration from CF.
2022-03-22 15:36:52 +00:00
2da0911d4c
Skeleton file main.py for EDA CalcFt. integration.
2022-03-22 12:48:43 +00:00
3f8e1cc252
Empatica features calculations with an example ZIP
2022-03-16 15:03:32 +00:00
dc2b462145
Reseting files to defaults - for Minimal Working Example
2022-03-16 13:30:19 +00:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
07da6be398
Add age, gender, and language as features.
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Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
1efb8e3112
Clean features across participants.
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Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
2fb068cb8b
Do not calculate accelerometer features.
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Add data cleaning.
2022-01-07 12:20:51 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
15653b6e70
Add forgotten line for hashed app names in config.
2021-12-15 17:26:54 +01:00
4485c4c95e
Delete columns we don't have.
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Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
633384c6a9
Use all available sensors for PHONE_YIELD.
2021-12-08 19:04:19 +01:00
8e2222f307
Bring back deleted lines which are required.
2021-12-08 18:59:10 +01:00
712ff74898
Set table names and calculate all relevant features.
2021-12-08 18:37:34 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
2b52f686b3
Define daily segments.
2021-12-08 18:20:22 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
4829b155d5
Make config changes for minimal workflow.
2021-11-17 18:53:44 +01:00
7f4683e0fe
Feature/screen default maxlength ( #164 )
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Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
2021-10-14 09:26:06 -04:00
primoz
=
junos
Meng Li