Commit Graph

27 Commits (ced3305ddb8942daa3fbc24c6b4ee38f973a1442)

Author SHA1 Message Date
JulioV 86509207ac Turn off warnings for tidyverse and dplyr 2020-10-23 10:41:00 -04:00
Meng Li b3fbc79195 Minor fix of metrics section 2020-08-17 17:27:58 -04:00
Meng Li 00385dc54d Discard useless parameters and related code of example 2020-08-17 10:48:15 -04:00
Meng Li 123b78d438 Fix minor bugs of modeling.py: f1-macro and proba 2020-08-16 16:08:51 -04:00
Meng Li 18d220d6c0 Fix data cleaning bug: days threshold 2020-08-06 17:26:37 -04:00
Meng Li 973e1669fa Move baselines into a folder; rename column of "num_of_participants" with "num_of_rows" in modeling.py 2020-08-05 07:51:35 -04:00
Meng Li e13b89b125 Add restore_sql_file rule; notsummarised module; diff platforms for heatmap_days_by_sensors 2020-08-03 13:09:16 -04:00
Meng Li 93157db210 Data cleaning section: replace "day_type" with "day_idx" 2020-07-27 18:27:36 -04:00
Meng Li 34ffe4abaf Add the rule to merge population model results 2020-05-15 18:49:14 -04:00
Meng Li 8df8a5c2b3 Add baseline 2020-05-15 18:45:45 -04:00
Meng Li 8c8378f74a Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC 2020-05-15 18:42:03 -04:00
Meng Li 5fab99d8df Add one rule to calculate the ratio of cells with missing values for cleaned features 2020-05-15 18:25:07 -04:00
Meng Li 78cd8159be Fix bug of clean_features_for_model 2020-05-15 17:53:43 -04:00
JulioV f0674122ff Replace packrat with renv 2020-05-01 19:46:04 -04:00
Meng Li 6ed52e7d1a Change the method of computing missing value cells 2020-04-30 15:40:55 -04:00
Meng Li 7cbb227214 Add modeling module 2020-04-29 18:53:54 -04:00
Meng Li 9ddb50ed59 Split days threshold of data cleaning into days_before_surgery and days_after_discharge
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-04-29 14:37:40 -04:00
Meng Li 5696b4f6d4 Add merge module for demographic features and target 2020-04-16 14:20:16 -04:00
Meng Li eac721de84 Add demographic_features and targets module; refactor analysis code
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-04-16 12:38:28 -04:00
JulioV cdd10578b3 Ignore NA values for dropping zero variance columns 2020-04-13 16:59:33 -04:00
Meng Li ac9fb487a6 Fix bug of select_days_to_analyse.py 2020-03-31 14:51:08 -04:00
Meng Li ea46df63d5 Get targets
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-03-26 17:27:23 -04:00
JulioV 0e173872df Refactor select_days_to_analyse, fix merge bugs, add clean metrics for model 2020-03-17 21:15:53 -04:00
Meng Li 7c240a9613 Select days to analyse
Co-authored-by: JulioV <juliovhz@gmail.com>
2020-03-17 17:26:30 -04:00
JulioV 3d4c26754e Rename merge metrics for models and add filter valid sensed days
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
2020-03-12 17:31:46 -04:00
Meng Li aba9f13332 Add merge metrics module for analysis rules 2020-03-09 13:32:14 -04:00
JulioV 41c233e4ed First commit 2019-10-22 13:11:01 -04:00