Commit Graph

1241 Commits (c050174ca359ff32f8331aa3efad13092efefe34)

Author SHA1 Message Date
Primoz c050174ca3 Various minimal changes. 2022-03-31 09:16:00 +00:00
Primoz f9e40711e7 Modified README for RAPIDS-CalculatingFeatures integration. 2022-03-30 16:17:07 +00:00
Primoz a357138f6e Added CF for HRV and shortened test data 2022-03-30 15:01:24 +00:00
Primoz 470993eeb0 Modification of getSampleRate method for all CF scripts. 2022-03-30 15:00:11 +00:00
= ab0b9227d7 Added ACC calculated features and shorter version of ACC data. 2022-03-29 09:41:51 +00:00
= a9244a60fc Corrections for TEMP cf src script. 2022-03-28 14:26:37 +00:00
= 8b76c96e47 Cleaning existing CF mains' and preparing src script for ACC. 2022-03-28 14:18:29 +00:00
= ca59a54d8f Get a sample rate from two sequential timestamps. 2022-03-28 13:50:08 +00:00
= 393dab72f5 Added components for the temperature features extraction. 2022-03-28 12:37:02 +00:00
Primoz 1902d02a86 Updating conda env. 2022-03-25 16:27:28 +00:00
Primoz f389ac9d89 Delete CF features folder 2022-03-25 16:24:52 +00:00
Primoz 191e53e543 Added cf provider for EDA feature processing. 2022-03-23 15:13:53 +00:00
Primoz d3a3f01f29 Preparation for the EDA features integration from CF. 2022-03-22 15:36:52 +00:00
Primoz 2da0911d4c Skeleton file main.py for EDA CalcFt. integration. 2022-03-22 12:48:43 +00:00
Primoz bd5a811256 Shortening input CSVs' and added test for ACC. 2022-03-21 12:00:57 +00:00
Primoz d1c59de2e9 Add folder structure for CF testing and EDA test. 2022-03-21 10:40:18 +00:00
Primoz a80f7c0cc4 Change of the relative import statements. 2022-03-21 10:38:15 +00:00
Primoz d63158c199 Build calc features lib and related packages. 2022-03-21 08:28:28 +00:00
Primoz 3f8e1cc252 Empatica features calculations with an example ZIP 2022-03-16 15:03:32 +00:00
Primoz dc2b462145 Reseting files to defaults - for Minimal Working Example 2022-03-16 13:30:19 +00:00
Primoz 50358978cc Testing Git integration on PC 2022-03-15 12:49:51 +00:00
Primoz 86c6312574 Added .devcontainer to gitignore 2022-03-14 18:36:10 +00:00
junos d8e9a309f7 Rename features and write baseline_interim. 2022-03-08 15:10:36 +01:00
junos a3a4f04ffe Setting with : produces NaNs. 2022-03-01 12:02:57 +01:00
junos aedb8b6785 Write questionnaire data to data/interim. 2022-03-01 12:02:36 +01:00
junos b5a6317f4b Calculate JCQ control and demand control ratio.
Include norms and corresponding quartile.
2022-02-28 18:51:47 +01:00
junos 2fed962644 Calculate JCQ demand score.
Hardcode question IDs to be reversed.
2022-02-28 18:30:41 +01:00
junos 30ac8b1cd5 Start calculating demand control features. 2022-02-23 19:08:10 +01:00
junos 9a74e74d08 Add the baseline features rule to snakefile.
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
junos 07da6be398 Add age, gender, and language as features.
Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
junos 176367631b Prepare baseline feature rule. 2022-02-23 11:09:33 +01:00
junos bf9c764c97 Split baseline data to participants.
And some csv I/O settings.
2022-02-04 18:37:57 +01:00
junos 16e608db74 First merge baseline datasets. 2022-02-04 18:21:42 +01:00
junos 204f6f50b0 Read the relevant files. 2022-02-04 18:06:02 +01:00
junos 685ed6a546 Set up demographic data download. 2022-02-04 17:37:00 +01:00
junos ffa7a30575 Make place for STRAW models. 2022-02-04 17:25:24 +01:00
junos afa3b8546f Mutate data in an R script.
The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
2022-01-26 16:34:19 +01:00
junos 1efb8e3112 Clean features across participants.
Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
junos b17a7eff1a Deal with inexplicable snakemake failure. 2022-01-07 18:11:38 +01:00
junos 2fb068cb8b Do not calculate accelerometer features.
Add data cleaning.
2022-01-07 12:20:51 +01:00
junos e1499a5ae2 Account for missing device_ids. 2021-12-15 20:41:28 +01:00
junos b29f902915 Look into ESM table for device_id. 2021-12-15 20:18:12 +01:00
junos c03ee788f6 Add missing dependencies for caret and corrr. 2021-12-15 19:26:16 +01:00
junos 5a9252e46e Merge remote-tracking branch 'origin/master' 2021-12-15 18:32:36 +01:00
junos e5cc02501f Set the timezone.csv path in config.
Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
junos 352598f3da Use absolute path to avoid RuleException. 2021-12-15 17:27:13 +01:00
junos 15653b6e70 Add forgotten line for hashed app names in config. 2021-12-15 17:26:54 +01:00
junos a66a7d0cc3 Keep track of warning messages.
These are not runtime errors, but might still indicate a problem.
2021-12-15 16:19:29 +01:00
junos 70cada8bb8 Consider a subset of columns when dropping. 2021-12-15 16:14:33 +01:00
junos d2ed73dccf Debug ValueError for index.
See exploration/debug_heatmap.py for illustration.
2021-12-15 16:03:04 +01:00