Primoz
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18b63127de
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Removed all standardizaton rules and configurations.
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2022-09-19 06:16:26 +00:00 |
Primoz
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6ba4a66deb
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Squashed commit of the following:
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Jul 20 13:49:22 2022 +0000
Environment version change.
commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 16:10:07 2022 +0000
Enabled cleaning for all participants + standardization files.
commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 14:14:51 2022 +0000
Features cleaning fixes after testing. Visualization script for phone features values.
commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 09:05:14 2022 +0000
Revert "Necessary config changes."
This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.
commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 13:19:47 2022 +0000
Adding cleaning function condition and cleaning functionality.
commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:51:56 2022 +0000
Translation of the cleaning individual RAPIDS function from R to py.
commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:02:18 2022 +0000
Necessary config changes.
commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 15:26:00 2022 +0000
Modified snakemake rule to dynamically choose script extention.
commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 14:43:08 2022 +0000
Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.
commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 09:49:41 2022 +0000
gitignore: adding required files so that RAPIDS can be run successfully.
commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 08:34:19 2022 +0000
Standardization bug fixes
commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 14 15:28:02 2022 +0000
Seperate rules for empatica vs. nonempatica standardization.
Parameter in config that controls the creation of standardized merged files for individual and all participants..
commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 12 14:23:03 2022 +0000
Preparing for final csvs' standardization.
commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:47 2022 +0000
Revert "Changes in config to be reverted."
This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.
commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:26 2022 +0000
Enabled standardization for rest (previously active) phone features.
Testing still needed.
commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 09:07:55 2022 +0000
Enabled standardization for phone calls.
All steps completed and tested.
commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 07:47:51 2022 +0000
Changes in config to be reverted.
commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:24 2022 +0000
Standardization for the rest of the features.
commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:08 2022 +0000
README update again
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2022-07-20 13:51:22 +00:00 |
junos
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e5cc02501f
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Set the timezone.csv path in config.
Take into account that TZCODES_FILE can be created with a rule.
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2021-12-15 18:09:30 +01:00 |
Meng Li
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a3fb718aea
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Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
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2021-09-23 17:40:06 -04:00 |
Meng Li
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a8a178486b
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Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
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2021-09-15 10:28:37 -04:00 |
Meng Li
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0d6f51be8b
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Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
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2021-05-26 17:36:52 -04:00 |
JulioV
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32472461ec
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- Fix bug when no phone data yield is needed to process location data
- Remove location rows with the same timestamp based on their accuracy
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2021-05-26 14:04:29 -04:00 |
Meng Li
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edf71e055d
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Add the EXCLUDE_SLEEP module for steps intraday features
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2021-05-21 15:23:21 -04:00 |
JulioV
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c48c1c8f24
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Optimize Barnett's computation multi-day segments
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2021-03-28 15:29:07 -04:00 |
JulioV
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d6c22fdbc7
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Fix an import bug and docs
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2021-03-15 19:35:58 -04:00 |
JulioV
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4528ab3641
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Replace SRC LANGUAGE and FOLDER with SCRIPT
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2021-03-14 22:14:13 -04:00 |
JulioV
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6970954358
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Change MUTATION structure
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2021-03-11 14:35:34 -05:00 |
JulioV
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1063b4ca65
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Add steps summary to fitbitjson_mysql
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2021-03-11 14:35:34 -05:00 |
JulioV
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8c79cfc56f
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Fix OS specific dependcies
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2021-03-11 14:35:34 -05:00 |
JulioV
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41711fcdb7
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Rename download_data add support for py containers
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2021-03-11 14:35:34 -05:00 |
JulioV
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f65e3c8b1a
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Migrate empatica sensors to new data stream
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2021-03-11 14:35:34 -05:00 |
JulioV
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fb054b539f
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Add support for multiple time zones
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2021-03-11 14:35:34 -05:00 |
JulioV
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dc11cb593d
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Add support for smartphone sources and schemas.
Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
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2021-03-11 14:35:33 -05:00 |
JulioV
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2e46f56111
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Empatica zips must be placed in pid folder and small fixes
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2021-02-21 17:32:41 -05:00 |
JulioV
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4b9857562b
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Add support for zip input files
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2021-02-21 17:32:41 -05:00 |
JulioV
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8c726f5d4f
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Start empatica support
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2021-02-21 17:32:41 -05:00 |
JulioV
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4c1e311135
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Add error msg for invalid phone data yield sensors
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2021-01-14 14:31:40 -05:00 |
JulioV
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8fd1d9dc29
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Add four new sensors without providers
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2021-01-14 14:31:40 -05:00 |
Meng Li
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9a0e57301b
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Update 4 plots for time_segments
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2020-12-03 21:00:32 -05:00 |
Meng Li
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b4a512faf3
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Add analysis example workflow
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2020-11-25 16:34:05 -05:00 |
JulioV
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24bf62a7ab
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Update file names
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2020-10-19 15:07:12 -04:00 |
Meng Li
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236b1cd809
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Update AR module for segments; Refactor input format
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2020-10-07 18:11:06 -04:00 |
JulioV
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6b1e006b82
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Refactor fused location resampling
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2020-10-07 11:51:31 -04:00 |
JulioV
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303d1472ed
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Change how we compute AR episodes
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2020-09-22 17:32:51 -04:00 |
JulioV
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b0f1477d7e
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Migrate location providers to new file structure and segments
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2020-08-28 13:53:00 -04:00 |
JulioV
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31ec5b0da4
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Finalise new day segment structure with calls as example
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2020-08-26 12:09:53 -04:00 |
JulioV
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026d056378
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Simplify window workflow
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2020-08-20 14:51:22 -04:00 |
JulioV
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a0b5b5982b
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Setup rules and files to support multiple
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2020-08-20 14:45:09 -04:00 |
JulioV
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b83f8ead44
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Refactor snakefiles to smk files and create common.smk
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2020-08-11 18:45:50 -04:00 |