f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
834bd3b93d
Refactor in Python of Barnett provider
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Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
cefcb0635b
Update heatmap of recorded phone sensors
2021-06-29 09:49:24 -04:00
bc06477d89
Update heatmap of sensor row count
2021-06-29 09:49:24 -04:00
e98a8ff7ca
Update histogram of phone data yield
2021-06-29 09:49:24 -04:00
f436f1f530
Update heatmap of correlation matrix
2021-06-29 09:49:23 -04:00
4d37696158
Update heatmaps of overall data yield
2021-06-29 09:48:30 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
9687081fbe
Refactor the rule phone_locations_add_doryab_extra_columns
2021-05-28 09:48:36 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
32472461ec
- Fix bug when no phone data yield is needed to process location data
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- Remove location rows with the same timestamp based on their accuracy
2021-05-26 14:04:29 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
d0858f8833
Fix overlapping periodic time segments
2021-03-28 15:29:07 -04:00
a5eb535126
Update visualizations docs & add time flag for heatmap of overall data yield
2021-03-23 21:40:55 -04:00
d6c22fdbc7
Fix an import bug and docs
2021-03-15 19:35:58 -04:00
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
f4b2bd1fb2
Cleanup data/
2021-03-14 13:36:22 -04:00
ffaa8f8a1c
Update create_example_participant_files rule
2021-03-12 20:04:43 -05:00
2b6447105a
Migrate analysis example to new data stream
2021-03-12 19:52:34 -05:00
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
1b8453bec4
Remove unused params from config.yaml
2021-03-11 14:57:34 -05:00
2ee45995f2
Update config docs and create participant files script
2021-03-11 14:40:33 -05:00
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
6970954358
Change MUTATION structure
2021-03-11 14:35:34 -05:00
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
8c79cfc56f
Fix OS specific dependcies
2021-03-11 14:35:34 -05:00
41711fcdb7
Rename download_data add support for py containers
2021-03-11 14:35:34 -05:00
f65e3c8b1a
Migrate empatica sensors to new data stream
2021-03-11 14:35:34 -05:00
fb054b539f
Add support for multiple time zones
2021-03-11 14:35:34 -05:00
6c51c6c239
Move phone_conversation to aware_mysql stream
2021-03-11 14:35:34 -05:00
ab1a3dbf79
Move phone_activity_recognition to aware_mysql stream
2021-03-11 14:35:34 -05:00
dc11cb593d
Add support for smartphone sources and schemas.
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Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
2021-03-11 14:35:33 -05:00
8377c12efb
Add sleep intraday features with RAPIDS provider
2021-02-26 17:47:01 -05:00
3d6caea6c4
Added the timeathome feature using infer_home_location.py as interim file.
2021-02-24 16:57:25 -05:00
2e46f56111
Empatica zips must be placed in pid folder and small fixes
2021-02-21 17:32:41 -05:00
4b9857562b
Add support for zip input files
2021-02-21 17:32:41 -05:00
8c726f5d4f
Start empatica support
2021-02-21 17:32:41 -05:00
b67f990816
Add new `FITBIT_DATA_YIELD` `RAPIDS` provider
2021-02-02 18:30:21 -05:00
4c1e311135
Add error msg for invalid phone data yield sensors
2021-01-14 14:31:40 -05:00
585bf7bc5d
Add code so new feature providers can be added for the new four sensors
2021-01-14 14:31:40 -05:00
8fd1d9dc29
Add four new sensors without providers
2021-01-14 14:31:40 -05:00
51c7739bfc
Revert "Start support for phone_keyboard"
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This reverts commit dd95b4f941
2020-12-20 16:29:40 -05:00
41f19ed781
Merge branch 'hotfix/v0.2.3' into develop
2020-12-18 11:27:39 -05:00
1b65f11b89
Fix participant IDS in the example analysis workflow
2020-12-18 11:27:04 -05:00
dd95b4f941
Start support for phone_keyboard
2020-12-14 13:42:22 -05:00
58ed986a61
Update PIDS in example_config.yaml
2020-12-04 18:45:16 -05:00
9a0e57301b
Update 4 plots for time_segments
2020-12-03 21:00:32 -05:00
88743b9a14
Update rule to create analysis workflow participant files
2020-12-03 12:48:32 -05:00
614e759551
Refactor day segments to time segments
2020-12-02 18:41:03 -05:00
0bd43c139c
Update plot#1: histogram_phone_data_yield
2020-12-01 14:21:33 -05:00
70991d6667
Add dates filter while parsing fitbit data
2020-11-30 12:34:14 -05:00
5178be585d
Rename modeling.py to modelling.py & Update example_config.yaml
2020-11-25 22:35:38 -05:00
5f51c94ac6
Separate device data configuration and update docs
2020-11-25 19:42:11 -05:00
b4a512faf3
Add analysis example workflow
2020-11-25 16:34:05 -05:00
ced3305ddb
Update R feature scripts to add sensor and provider names automatically
2020-11-25 14:49:42 -05:00
f02ca2624d
Add phone yield sensor
2020-11-24 19:12:16 -05:00
deba6b9e4f
Update sleep summary features for segments
2020-11-23 12:01:00 -05:00
a71efd6b85
Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY
2020-11-11 21:16:48 -05:00
b7e22b7440
Fix fitbit_parse_heartrate rule's table parameter
2020-11-11 20:23:41 -05:00
9fc36f67e2
Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY
2020-11-11 17:27:46 -05:00
6ac4c05772
Merge branch 'day_segments' of https://github.com/carissalow/rapids into day_segments
2020-11-06 17:18:02 -05:00
2aa44fc504
Change SENSOR_DATA to DEVICE_DATA
2020-11-04 17:16:46 -05:00
82873c285d
Make sure feature rules of all sensors support both Python and R scripts
2020-11-04 14:05:25 -05:00
39632c66f5
Update steps features for segments
2020-10-30 18:57:04 -04:00
ed7585c2bf
Update heartrate features for segments
2020-10-27 17:55:57 -04:00
d5931c75d8
Refactor script to create participants files
2020-10-27 17:13:16 -04:00
c8176b2d90
Fix MissingInputException issue of download_fitbit_data rule
2020-10-27 14:59:47 -04:00
2601ccde87
Fix minor bug of download_fitbit_data rule
2020-10-27 13:40:10 -04:00
b986599226
Add support to read fitbit data from csv files
2020-10-26 17:17:53 -04:00
234588c94d
Expose episode threshold between rows parameter
2020-10-26 15:28:19 -04:00
1d04aa6807
Add check for non-overlapping event day segments
2020-10-23 12:15:26 -04:00
47adb8bc4b
Add tz support to fitbit
2020-10-22 14:38:40 -04:00
cff83a7ceb
Implement parse fitbit data
2020-10-22 13:08:52 -04:00
c266f6dd10
Update participant files structure and fitbit download rule
2020-10-20 19:12:01 -04:00
24bf62a7ab
Update file names
2020-10-19 15:07:12 -04:00
29dcd1f284
Add accelerometer features of RAPIDS provider
2020-10-13 11:42:36 -04:00
236b1cd809
Update AR module for segments; Refactor input format
2020-10-07 18:11:06 -04:00
6b1e006b82
Refactor fused location resampling
2020-10-07 11:51:31 -04:00
f1717e59e7
Update screen&battery episodes features with different segment format
2020-09-29 17:13:34 -04:00
0dafdd1340
Redo resample episodes in R, new battery episodes
2020-09-29 15:18:48 -04:00
303d1472ed
Change how we compute AR episodes
2020-09-22 17:32:51 -04:00
a851a460e4
Change the way we compute battery episodes
2020-09-22 16:53:51 -04:00
f806cb44ac
Fix the bug of screen duration features for different segments
2020-09-18 20:25:29 -04:00
4dc8d38c66
Optimise assign to day segment
2020-09-16 14:54:20 -04:00
junos
Meng Li
JulioV
kirtirajk
nikunjgoel95