07da6be398
Add age, gender, and language as features.
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Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
c801f66533
Retain a single participant ID.
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Do not plot heatmaps as this is bugged.
2022-02-23 11:10:54 +01:00
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
bf9c764c97
Split baseline data to participants.
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And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
ffa7a30575
Make place for STRAW models.
2022-02-04 17:25:24 +01:00
afa3b8546f
Mutate data in an R script.
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The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
2022-01-26 16:34:19 +01:00
1efb8e3112
Clean features across participants.
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Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
b17a7eff1a
Deal with inexplicable snakemake failure.
2022-01-07 18:11:38 +01:00
2fb068cb8b
Do not calculate accelerometer features.
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Add data cleaning.
2022-01-07 12:20:51 +01:00
e1499a5ae2
Account for missing device_ids.
2021-12-15 20:41:28 +01:00
b29f902915
Look into ESM table for device_id.
2021-12-15 20:18:12 +01:00
c03ee788f6
Add missing dependencies for caret and corrr.
2021-12-15 19:26:16 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
352598f3da
Use absolute path to avoid RuleException.
2021-12-15 17:27:13 +01:00
15653b6e70
Add forgotten line for hashed app names in config.
2021-12-15 17:26:54 +01:00
a66a7d0cc3
Keep track of warning messages.
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These are not runtime errors, but might still indicate a problem.
2021-12-15 16:19:29 +01:00
70cada8bb8
Consider a subset of columns when dropping.
2021-12-15 16:14:33 +01:00
d2ed73dccf
Debug ValueError for index.
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See exploration/debug_heatmap.py for illustration.
2021-12-15 16:03:04 +01:00
6f451e05ac
Bring back application_name.
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This column still needs to be in the data, so add it in app_add_name.py.
Later, join categories by package hash.
2021-12-15 12:58:27 +01:00
4485c4c95e
Delete columns we don't have.
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Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
633384c6a9
Use all available sensors for PHONE_YIELD.
2021-12-08 19:04:19 +01:00
8e2222f307
Bring back deleted lines which are required.
2021-12-08 18:59:10 +01:00
712ff74898
Set table names and calculate all relevant features.
2021-12-08 18:37:34 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
2b52f686b3
Define daily segments.
2021-12-08 18:20:22 +01:00
22513415e9
Do not ask for specific patch numbers of libraries!
2021-12-03 14:38:25 +01:00
0b8a493ff2
Incorporate mulitple timezones into RAPIDS.
2021-12-01 18:20:27 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
37b3460b76
Use Empatica wristband numbers as provided in CSV.
2021-12-01 17:20:57 +01:00
22f9e0722d
Start preparing the true usernames CSV file.
2021-12-01 11:29:22 +01:00
0be4cd5a8f
Remove unnecessary library.
2021-11-30 17:08:07 +01:00
b99a3c19ed
Update dbplyr to the latest version.
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distinct changed its behaviour from 2.0.0 to 2.1.0.
2021-11-29 18:34:26 +01:00
04ad2d0b81
Source specific container script.
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It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
35d9779026
Prepare the tibble in requested format.
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Write it to a CSV file.
2021-11-29 17:54:16 +01:00
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
ab84109d55
Prepare a function to compile participants data.
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It combines functions from container.R
2021-11-24 19:07:56 +01:00
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
3acf6ece14
Add a function to pull device IDs.
2021-11-24 18:23:53 +01:00
8b2717122d
Add a function to get participants' IDs.
2021-11-24 18:05:17 +01:00
9338f77ae6
Update docs for Git Flow section & RAPIDS paper info
2021-11-19 13:57:10 -05:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
296960f425
Fix the bug of location doryab features when a participant is moving during the whole time segment
2021-11-18 18:42:19 -05:00
junos
Meng Li