04ad2d0b81
Source specific container script.
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It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
35d9779026
Prepare the tibble in requested format.
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Write it to a CSV file.
2021-11-29 17:54:16 +01:00
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
ab84109d55
Prepare a function to compile participants data.
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It combines functions from container.R
2021-11-24 19:07:56 +01:00
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
3acf6ece14
Add a function to pull device IDs.
2021-11-24 18:23:53 +01:00
8b2717122d
Add a function to get participants' IDs.
2021-11-24 18:05:17 +01:00
9338f77ae6
Update docs for Git Flow section & RAPIDS paper info
2021-11-19 13:57:10 -05:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
296960f425
Fix the bug of location doryab features when a participant is moving during the whole time segment
2021-11-18 18:42:19 -05:00
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
ed193d2290
Revert "Correct the name of a field."
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This reverts commit b335561a55
2021-11-17 19:16:35 +01:00
24b11ea101
Force Unix style end of line.
2021-11-17 19:12:40 +01:00
4829b155d5
Make config changes for minimal workflow.
2021-11-17 18:53:44 +01:00
b335561a55
Correct the name of a field.
2021-11-17 18:50:06 +01:00
fcec3e2f93
Implement the necessary functions for PSQL.
2021-11-17 18:49:25 +01:00
7a1e4f7139
Add the format file copied from MySQL.
2021-11-17 18:46:16 +01:00
ae8ed3999f
Add RPostgres to renv.
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And update its dependencies.
2021-11-17 12:56:14 +01:00
399dbc7d75
Update team.md ( #167 )
2021-11-13 16:47:12 -05:00
dfa11acf87
Updated phone battery test data and results ( #165 )
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Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-10-21 22:54:19 -04:00
da633c5d08
Update change-log for v1.6.0
2021-10-18 17:03:21 -04:00
7f4683e0fe
Feature/screen default maxlength ( #164 )
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Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
2021-10-14 09:26:06 -04:00
3744367aa9
Updated docs and workflow example for location features with DORYAB provider
2021-10-13 17:06:53 -04:00
c7e8777a6e
Merge branch 'feature/phone_locations_refactor' into develop
2021-09-23 18:22:11 -04:00
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
80522e6b7f
Merge branch 'feature/phone_calls_refactor' into develop
2021-09-15 11:47:41 -04:00
ff38e36809
Tested phone call episodes
2021-09-15 10:29:56 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
2e553dc9e7
Add tqdm package to environment.yaml
2021-08-16 11:04:03 -04:00
3ac12e7dad
Fix the bug of step intraday features when INCLUDE_ZERO_STEP_ROWS is False
2021-08-11 12:40:40 -04:00
1520a1e755
v1.5.0 Update changelog and team pages
2021-08-09 18:21:58 -04:00
46e4425323
Updated test data for data yield feature
2021-08-09 17:56:29 -04:00
35eebe8a51
Bug fixed: set ratiovalidyielded mins/hours value to the range 0 to 1
2021-08-09 17:56:29 -04:00
3c46a1c878
Adding Ian and Shirley as community contributors
2021-08-05 18:25:37 -04:00
3e69966c91
Update error message
2021-08-04 15:33:02 -04:00
4ddb2845a6
Update initialize_params
2021-08-04 15:33:02 -04:00
834bd3b93d
Refactor in Python of Barnett provider
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Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
c41e1f08cc
Tested data yield feature
2021-08-04 11:06:31 -04:00
64976919e4
Tested phone accelerometer feature
2021-08-04 11:06:31 -04:00
7f1c502ea0
Fixed bug: Added local_segment column if no data left after filtered
2021-08-04 11:06:31 -04:00
2e3e433d2b
Tested fitbit step summary feature
2021-07-28 10:32:16 -04:00
6f5a143191
Tested fitbit steps intraday feature
2021-07-28 10:32:16 -04:00
872125fbb2
Update link to paper that used RAPIDS
2021-07-23 11:57:04 -04:00
b52059b027
Ensure date/time format is maintained
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Within the 'determine which is home' for loop, 'xx' is the midpoint of two datetime objects. When the midpoint is calculated to be midnight, only the date is returned. This can be replicated with:
mydates <- as.POSIXct("2018-01-01 00:00:00", tz = "UTC")
mydates
[1] "2018-01-01 UTC"
This results in 'hourofday' being NA as an hour cannot be found. By adding the suggested format wrapper, the time is maintained and 'hourofday' can be determined. It can then successfully be applied to the embedded if-statement within the loop.
mydates <- format(as.POSIXct("2018-01-01 00:00:00", tz = "UTC"), "%Y-%m-%d %H:%M:%S")
mydates
[1] "01-01-2018 00:00:00"
2021-07-23 10:12:11 -04:00
5a465873c4
Tested fitbit heartrate intraday feature
2021-07-21 10:24:02 -04:00
junos
Meng Li
JulioV
Weiyu
Shirley
Hannah Roberts