570d2eb656
Add the file for population model to Snakefile.
2022-04-12 14:11:40 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
...
Does nothing for now.
2022-04-06 17:47:03 +02:00
baa94c4c4e
Correct additional error in feature file naming.
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Add the final feature file to the list in Snakefile.
2022-04-06 17:29:17 +02:00
f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
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And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
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It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
9a74e74d08
Add the baseline features rule to snakefile.
...
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
bf9c764c97
Split baseline data to participants.
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And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
4d37696158
Update heatmaps of overall data yield
2021-06-29 09:48:30 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
2ee45995f2
Update config docs and create participant files script
2021-03-11 14:40:33 -05:00
1b0ee4bbf0
Add sleep intraday to fitbitjson_mysql
2021-03-11 14:39:20 -05:00
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
f65e3c8b1a
Migrate empatica sensors to new data stream
2021-03-11 14:35:34 -05:00
6c51c6c239
Move phone_conversation to aware_mysql stream
2021-03-11 14:35:34 -05:00
ab1a3dbf79
Move phone_activity_recognition to aware_mysql stream
2021-03-11 14:35:34 -05:00
8377c12efb
Add sleep intraday features with RAPIDS provider
2021-02-26 17:47:01 -05:00
3d6caea6c4
Added the timeathome feature using infer_home_location.py as interim file.
2021-02-24 16:57:25 -05:00
84a8a93082
Initial support for a config schema
2021-02-21 19:55:27 -05:00
2e46f56111
Empatica zips must be placed in pid folder and small fixes
2021-02-21 17:32:41 -05:00
a26a44819a
Add stats features for empatica bvp, eda, ibi, temp
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Fix Snakefile file indentention
2021-02-21 17:32:41 -05:00
junos
Meng Li
kirtirajk
JulioV
nikunjgoel95
Joe Kim