2e545e81f0
Include feature calculations for different scales.
2022-04-05 19:05:34 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
...
And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
1c42347b9b
Small changes.
2022-04-04 12:19:33 +00:00
c050174ca3
Various minimal changes.
2022-03-31 09:16:00 +00:00
f9e40711e7
Modified README for RAPIDS-CalculatingFeatures integration.
2022-03-30 16:17:07 +00:00
a357138f6e
Added CF for HRV and shortened test data
2022-03-30 15:01:24 +00:00
470993eeb0
Modification of getSampleRate method for all CF scripts.
2022-03-30 15:00:11 +00:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
3af8de6235
Create feature provider script.
2022-03-30 10:40:53 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
9478dc94f2
Add an else.
...
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2022-03-30 10:40:53 +02:00
ab0b9227d7
Added ACC calculated features and shorter version of ACC data.
2022-03-29 09:41:51 +00:00
a9244a60fc
Corrections for TEMP cf src script.
2022-03-28 14:26:37 +00:00
8b76c96e47
Cleaning existing CF mains' and preparing src script for ACC.
2022-03-28 14:18:29 +00:00
ca59a54d8f
Get a sample rate from two sequential timestamps.
2022-03-28 13:50:08 +00:00
393dab72f5
Added components for the temperature features extraction.
2022-03-28 12:37:02 +00:00
1902d02a86
Updating conda env.
2022-03-25 16:27:28 +00:00
f389ac9d89
Delete CF features folder
2022-03-25 16:24:52 +00:00
191e53e543
Added cf provider for EDA feature processing.
2022-03-23 15:13:53 +00:00
d3a3f01f29
Preparation for the EDA features integration from CF.
2022-03-22 15:36:52 +00:00
2da0911d4c
Skeleton file main.py for EDA CalcFt. integration.
2022-03-22 12:48:43 +00:00
bd5a811256
Shortening input CSVs' and added test for ACC.
2022-03-21 12:00:57 +00:00
d1c59de2e9
Add folder structure for CF testing and EDA test.
2022-03-21 10:40:18 +00:00
a80f7c0cc4
Change of the relative import statements.
2022-03-21 10:38:15 +00:00
d63158c199
Build calc features lib and related packages.
2022-03-21 08:28:28 +00:00
b18dba366e
Add an else.
...
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2022-03-16 18:59:29 +01:00
916bb21a53
Merge branch 'labels' into run_test_participant
2022-03-16 18:56:00 +01:00
c6144f8403
Reverse JCQ items.
2022-03-16 18:55:46 +01:00
fec7cc9550
Merge branch 'labels' into run_test_participant
2022-03-16 18:30:03 +01:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
155395512c
Merge branch 'labels' into run_test_participant
2022-03-16 17:09:53 +01:00
cb116100dd
Move preprocessing to features.
2022-03-16 17:06:42 +01:00
19b9da0ba3
Separate function definitions from main.
2022-03-16 16:49:28 +01:00
3f8e1cc252
Empatica features calculations with an example ZIP
2022-03-16 15:03:32 +00:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
dc2b462145
Reseting files to defaults - for Minimal Working Example
2022-03-16 13:30:19 +00:00
50358978cc
Testing Git integration on PC
2022-03-15 12:49:51 +00:00
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
5f293211a7
Reformat.
2022-03-15 13:28:51 +01:00
86c6312574
Added .devcontainer to gitignore
2022-03-14 18:36:10 +00:00
junos
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Primoz