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92 Commits (7f6448c43183445be7f29dfc35200c2a91a8c0ea)

Author SHA1 Message Date
kaguillera 7f6448c431 Add Travis CI 2020-05-18 19:24:34 -04:00
Meng Li 34ffe4abaf Add the rule to merge population model results 2020-05-15 18:49:14 -04:00
Meng Li 8df8a5c2b3 Add baseline 2020-05-15 18:45:45 -04:00
Meng Li 8c8378f74a Split modeling module into two rules; Add RandomOverSampler for resampling; Add log; Fix bug of AUC 2020-05-15 18:42:03 -04:00
Meng Li 5fab99d8df Add one rule to calculate the ratio of cells with missing values for cleaned features 2020-05-15 18:25:07 -04:00
Meng Li 6e99e69f8c Save cleaned features with different data cleaning threasholds under different folders 2020-05-15 17:59:14 -04:00
Meng Li 915bdd04b1 Parse Fitbit summary and intraday data; Extract Fitbit daily features from summary data 2020-05-15 17:51:00 -04:00
JulioV c30bf4d24f
Update renv.snakefile 2020-05-06 18:00:44 -04:00
JulioV f0674122ff Replace packrat with renv 2020-05-01 19:46:04 -04:00
Meng Li 7cbb227214 Add modeling module 2020-04-29 18:53:54 -04:00
Meng Li 9ddb50ed59 Split days threshold of data cleaning into days_before_surgery and days_after_discharge 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-29 14:37:40 -04:00
Meng Li 490599c742 Implement AR features for iOS 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-20 18:05:54 -04:00
Meng Li 5696b4f6d4 Add merge module for demographic features and target 2020-04-16 14:20:16 -04:00
Meng Li eac721de84 Add demographic_features and targets module; refactor analysis code 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-16 12:38:28 -04:00
JulioV 010114c1aa Add wifi features 2020-04-13 13:24:52 -04:00
Mingze Cao 8cc93c8791 Refactor battery feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 15:06:25 -05:00
Mingze Cao 2d7d3bfccf Refactor location_barnett features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-09 12:20:39 -05:00
Mingze Cao c2fbc3ad7a Refactor sms feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 15:02:58 -05:00
Mingze Cao 97c83caebc Refactor fitbit_heartrate feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 14:31:43 -05:00
Mingze Cao a53ba242f8 Refactor google_activity_recognition feature: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:36:36 -05:00
Mingze Cao 0809001dfa Refactor light features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 13:02:53 -05:00
Mingze Cao f46e8c0666 Refactor applications_foreground features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 12:31:43 -05:00
Mingze Cao d1c38016de Refactor call features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:51:18 -05:00
Mingze Cao e0d19cbc1b Refactor screen features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-04-08 10:05:16 -05:00
Mingze Cao 3986f4e185 Refactor fitbit_step features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-03 16:03:45 -05:00
Mingze Cao 595bdd6f5b Refactor bluetooth features: replace "metrics" with "features" 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-03 12:07:09 -05:00
Mingze Cao 6045df494d Modify the Accelerometer ‘Metrics’ to Accelerometer ‘Features’ 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-04-02 16:36:28 -05:00
Meng Li ea46df63d5 Get targets 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-03-26 17:27:23 -04:00
JulioV 0e173872df Refactor select_days_to_analyse, fix merge bugs, add clean metrics for model 2020-03-17 21:15:53 -04:00
Meng Li 7c240a9613 Select days to analyse 
Co-authored-by: JulioV <juliovhz@gmail.com>
 2020-03-17 17:26:30 -04:00
JulioV 3d4c26754e Rename merge metrics for models and add filter valid sensed days 
Co-authored-by: Meng Li <AnnieLM1996@gmail.com>
 2020-03-12 17:31:46 -04:00
Meng Li b23bb0e402 Add INCLUDE_ZERO_STEP_ROWS flag for step sensor 2020-03-09 15:59:51 -04:00
Meng Li aba9f13332 Add merge metrics module for analysis rules 2020-03-09 13:32:14 -04:00
JulioV 12ceb87090 Merge branch 'master' of https://github.com/carissalow/rapids 2020-03-05 10:32:46 -05:00
JulioV ccc283db16 Add day segment parameter to location barnett rule 2020-03-05 10:32:38 -05:00
Meng Li c8b7275084 Add firstuseafterTIME feature for screen sensor 2020-03-04 12:21:36 -05:00
Meng Li 85f4ec2ab6 Delete screen event features and add countepisode and episodepersensedminutes 2020-03-03 17:31:15 -05:00
JulioV c7bc430425 Add priority to download participants rule 2020-03-03 11:08:18 -05:00
JulioV 619a6e6e2b Fix screen delta extraction for iOS and Android 2020-03-02 19:26:20 -05:00
Meng Li fa9029b090 Add overall compliance heatmap for last 7 days 2020-02-25 13:27:17 -05:00
JulioV f22d1834ee Add metric filter to barnett location features 2020-02-21 10:58:35 -05:00
Meng Li 579df6325f Add date filter for download_dataset 2020-02-20 15:51:22 -05:00
Meng Li 3369a97d0e Add device_id and label to heatmaps 2020-02-20 10:16:03 -05:00
Meng Li 76888b412d Add label and dates for external files 2020-02-18 16:41:10 -05:00
JulioV 6bbc916702 Add download_participants functionality 2020-02-10 16:45:34 -05:00
Meng Li 0840235280 Add applications_foreground features 2020-02-07 11:52:55 -05:00
Meng Li 770764ec8a Add heartrate features 2020-02-07 11:35:15 -05:00
Meng Li 3d13940bd3 Fixed heatmap issue#27 2020-02-07 11:14:19 -05:00
Echhit Joshi d82fa0d217 Add Fitbit steps feature extraction 2020-01-29 16:22:53 -05:00
JulioV 4aec2c4032 Combine all fitbit sensors in one script and one rule 2020-01-16 17:20:04 -05:00