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63 Commits (798ec973b453a1d57cf21bac6f5ecf6cdcf59b22)

Author SHA1 Message Date
junos cb116100dd Move preprocessing to features. 2022-03-16 17:06:42 +01:00
junos d470eef27e Add a rule to preprocess and clean ESM. 2022-03-09 18:38:46 +01:00
junos b29f902915 Look into ESM table for device_id. 2021-12-15 20:18:12 +01:00
junos e5cc02501f Set the timezone.csv path in config. 
Take into account that TZCODES_FILE can be created with a rule.
 2021-12-15 18:09:30 +01:00
junos 1f54195437 Configure timezone file to be created automatically. 2021-12-08 18:21:29 +01:00
junos 0b8a493ff2 Incorporate mulitple timezones into RAPIDS. 2021-12-01 18:20:27 +01:00
junos f0d29d0d1a Incorporate DB query for usernames into snakemake workflow. 2021-12-01 18:14:27 +01:00
junos da5ff0f36e Correct small errors in settings. 2021-11-29 18:04:06 +01:00
junos 181e4f0118 Add parameters to yaml file. 
And use these in the prepare_participants_file function.
 2021-11-29 16:57:50 +01:00
junos 39bd244511 [WIP] Prepare yaml files. 
These will be used to create participants files.
 2021-11-24 19:11:19 +01:00
Meng Li a3fb718aea Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes 2021-09-23 17:40:06 -04:00
Meng Li 0d6f51be8b Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs 2021-05-26 17:36:52 -04:00
JulioV 32472461ec - Fix bug when no phone data yield is needed to process location data 
- Remove location rows with the same timestamp based on their accuracy
 2021-05-26 14:04:29 -04:00
Meng Li edf71e055d Add the EXCLUDE_SLEEP module for steps intraday features 2021-05-21 15:23:21 -04:00
JulioV d0858f8833 Fix overlapping periodic time segments 2021-03-28 15:29:07 -04:00
JulioV f4b2bd1fb2 Cleanup data/ 2021-03-14 13:36:22 -04:00
Meng Li ffaa8f8a1c Update create_example_participant_files rule 2021-03-12 20:04:43 -05:00
JulioV fae0c2ac05 Swap TABLE for CONTAINER 2021-03-12 18:14:49 -05:00
JulioV 1b8453bec4 Remove unused params from config.yaml 2021-03-11 14:57:34 -05:00
JulioV 2ee45995f2 Update config docs and create participant files script 2021-03-11 14:40:33 -05:00
JulioV 6970954358 Change MUTATION structure 2021-03-11 14:35:34 -05:00
JulioV 1063b4ca65 Add steps summary to fitbitjson_mysql 2021-03-11 14:35:34 -05:00
JulioV 41711fcdb7 Rename download_data add support for py containers 2021-03-11 14:35:34 -05:00
JulioV f65e3c8b1a Migrate empatica sensors to new data stream 2021-03-11 14:35:34 -05:00
JulioV fb054b539f Add support for multiple time zones 2021-03-11 14:35:34 -05:00
JulioV dc11cb593d Add support for smartphone sources and schemas. 
Initial support for accelerometer
Update docs for automatically create participants
Update docs for initial multiple time zones
 2021-03-11 14:35:33 -05:00
nikunjgoel95 3d6caea6c4 Added the timeathome feature using infer_home_location.py as interim file. 2021-02-24 16:57:25 -05:00
JulioV 2e46f56111 Empatica zips must be placed in pid folder and small fixes 2021-02-21 17:32:41 -05:00
JulioV 4b9857562b Add support for zip input files 2021-02-21 17:32:41 -05:00
JulioV 8c726f5d4f Start empatica support 2021-02-21 17:32:41 -05:00
JulioV 585bf7bc5d Add code so new feature providers can be added for the new four sensors 2021-01-14 14:31:40 -05:00
JulioV 1b65f11b89 Fix participant IDS in the example analysis workflow 2020-12-18 11:27:04 -05:00
Meng Li 58ed986a61 Update PIDS in example_config.yaml 2020-12-04 18:45:16 -05:00
JulioV 88743b9a14 Update rule to create analysis workflow participant files 2020-12-03 12:48:32 -05:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
Meng Li 70991d6667 Add dates filter while parsing fitbit data 2020-11-30 12:34:14 -05:00
JulioV 5f51c94ac6 Separate device data configuration and update docs 2020-11-25 19:42:11 -05:00
JulioV ced3305ddb Update R feature scripts to add sensor and provider names automatically 2020-11-25 14:49:42 -05:00
JulioV f02ca2624d Add phone yield sensor 2020-11-24 19:12:16 -05:00
Meng Li deba6b9e4f Update sleep summary features for segments 2020-11-23 12:01:00 -05:00
Meng Li a71efd6b85 Split FITBIT_STEPS into FITBIT_STEPS_SUMMARY and FITBIT_STEPS_INTRADAY 2020-11-11 21:16:48 -05:00
Meng Li b7e22b7440 Fix fitbit_parse_heartrate rule's table parameter 2020-11-11 20:23:41 -05:00
Meng Li 9fc36f67e2 Split FITBIT_HEARTRATE into FITBIT_HEARTRATE_SUMMARY and FITBIT_HEARTRATE_INTRADAY 2020-11-11 17:27:46 -05:00
JulioV 2aa44fc504 Change SENSOR_DATA to DEVICE_DATA 2020-11-04 17:16:46 -05:00
JulioV d5931c75d8 Refactor script to create participants files 2020-10-27 17:13:16 -04:00
Meng Li c8176b2d90 Fix MissingInputException issue of download_fitbit_data rule 2020-10-27 14:59:47 -04:00
Meng Li 2601ccde87 Fix minor bug of download_fitbit_data rule 2020-10-27 13:40:10 -04:00
JulioV b986599226 Add support to read fitbit data from csv files 2020-10-26 17:17:53 -04:00
JulioV 1d04aa6807 Add check for non-overlapping event day segments 2020-10-23 12:15:26 -04:00
JulioV 47adb8bc4b Add tz support to fitbit 2020-10-22 14:38:40 -04:00