junos
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
junos
37b3460b76
Use Empatica wristband numbers as provided in CSV.
2021-12-01 17:20:57 +01:00
junos
22f9e0722d
Start preparing the true usernames CSV file.
2021-12-01 11:29:22 +01:00
junos
0be4cd5a8f
Remove unnecessary library.
2021-11-30 17:08:07 +01:00
junos
b99a3c19ed
Update dbplyr to the latest version.
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distinct changed its behaviour from 2.0.0 to 2.1.0.
2021-11-29 18:34:26 +01:00
junos
04ad2d0b81
Source specific container script.
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It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
junos
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
junos
35d9779026
Prepare the tibble in requested format.
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Write it to a CSV file.
2021-11-29 17:54:16 +01:00
junos
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
junos
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
junos
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
junos
ab84109d55
Prepare a function to compile participants data.
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It combines functions from container.R
2021-11-24 19:07:56 +01:00
junos
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
junos
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
junos
3acf6ece14
Add a function to pull device IDs.
2021-11-24 18:23:53 +01:00
junos
8b2717122d
Add a function to get participants' IDs.
2021-11-24 18:05:17 +01:00
Meng Li
9338f77ae6
Update docs for Git Flow section & RAPIDS paper info
2021-11-19 13:57:10 -05:00
Meng Li
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
Meng Li
296960f425
Fix the bug of location doryab features when a participant is moving during the whole time segment
2021-11-18 18:42:19 -05:00
Meng Li
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
junos
ed193d2290
Revert "Correct the name of a field."
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This reverts commit b335561a55
.
It was actually correct.
2021-11-17 19:16:35 +01:00
junos
24b11ea101
Force Unix style end of line.
2021-11-17 19:12:40 +01:00
junos
4829b155d5
Make config changes for minimal workflow.
2021-11-17 18:53:44 +01:00
junos
b335561a55
Correct the name of a field.
2021-11-17 18:50:06 +01:00
junos
fcec3e2f93
Implement the necessary functions for PSQL.
2021-11-17 18:49:25 +01:00
junos
7a1e4f7139
Add the format file copied from MySQL.
2021-11-17 18:46:16 +01:00
junos
ae8ed3999f
Add RPostgres to renv.
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And update its dependencies.
2021-11-17 12:56:14 +01:00
JulioV
399dbc7d75
Update team.md ( #167 )
2021-11-13 16:47:12 -05:00
Meng Li
dfa11acf87
Updated phone battery test data and results ( #165 )
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Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-10-21 22:54:19 -04:00
Meng Li
da633c5d08
Update change-log for v1.6.0
2021-10-18 17:03:21 -04:00
Meng Li
7f4683e0fe
Feature/screen default maxlength ( #164 )
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Updated the default IGNORE_EPISODES_LONGER_THAN to be 6 hours for screen RAPIDS provider
2021-10-14 09:26:06 -04:00
Meng Li
3744367aa9
Updated docs and workflow example for location features with DORYAB provider
2021-10-13 17:06:53 -04:00
Meng Li
c7e8777a6e
Merge branch 'feature/phone_locations_refactor' into develop
2021-09-23 18:22:11 -04:00
Meng Li
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
Meng Li
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
Meng Li
80522e6b7f
Merge branch 'feature/phone_calls_refactor' into develop
2021-09-15 11:47:41 -04:00
Weiyu
ff38e36809
Tested phone call episodes
2021-09-15 10:29:56 -04:00
Meng Li
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
JulioV
2e553dc9e7
Add tqdm package to environment.yaml
2021-08-16 11:04:03 -04:00
Meng Li
3ac12e7dad
Fix the bug of step intraday features when INCLUDE_ZERO_STEP_ROWS is False
2021-08-11 12:40:40 -04:00
JulioV
1520a1e755
v1.5.0 Update changelog and team pages
2021-08-09 18:21:58 -04:00
Weiyu
46e4425323
Updated test data for data yield feature
2021-08-09 17:56:29 -04:00
Weiyu
35eebe8a51
Bug fixed: set ratiovalidyielded mins/hours value to the range 0 to 1
2021-08-09 17:56:29 -04:00
Shirley
3c46a1c878
Adding Ian and Shirley as community contributors
2021-08-05 18:25:37 -04:00
JulioV
3e69966c91
Update error message
2021-08-04 15:33:02 -04:00
Shirley
4ddb2845a6
Update initialize_params
2021-08-04 15:33:02 -04:00
JulioV
834bd3b93d
Refactor in Python of Barnett provider
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Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
Weiyu
c41e1f08cc
Tested data yield feature
2021-08-04 11:06:31 -04:00
Weiyu
64976919e4
Tested phone accelerometer feature
2021-08-04 11:06:31 -04:00
Weiyu
7f1c502ea0
Fixed bug: Added local_segment column if no data left after filtered
2021-08-04 11:06:31 -04:00