887fd7dc72
Merge branch 'empatica_calculating_features'
2022-07-06 11:53:21 +00:00
9ea39dc557
Standardization as a Snakefile's rule enabled for all E4 sensors.
2022-06-13 18:17:30 +00:00
402059871f
Making standardization as a rule. WIP: done only for BVP.
2022-06-13 14:12:03 +00:00
bb62497ba6
Patching IBI with BVP - selecting appropriate pipeline entry point. WIP
2022-05-24 11:07:18 +00:00
2a8f58f5c8
Patching IBI with BVP. WIP
2022-05-20 13:18:45 +00:00
4ad261fae5
Rename baseline features AGAIN.
...
Correct other mistakes.
2022-04-12 16:55:01 +02:00
570d2eb656
Add the file for population model to Snakefile.
2022-04-12 14:11:40 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
...
Does nothing for now.
2022-04-06 17:47:03 +02:00
baa94c4c4e
Correct additional error in feature file naming.
...
Add the final feature file to the list in Snakefile.
2022-04-06 17:29:17 +02:00
f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
...
And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
8ed7d23348
Merge branch 'labels' into run_test_participant
2022-03-16 17:56:07 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
3e9cdde66e
Merge branch 'master' into run_test_participant
2022-03-16 17:27:50 +01:00
83a8bb6689
Add an option to disable calculation of baseline features.
2022-03-16 15:51:12 +01:00
dc2b462145
Reseting files to defaults - for Minimal Working Example
2022-03-16 13:30:19 +00:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
9a74e74d08
Add the baseline features rule to snakefile.
...
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
bf9c764c97
Split baseline data to participants.
...
And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
5bad3eb8b5
Data cleaning ( #166 )
...
* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
4d37696158
Update heatmaps of overall data yield
2021-06-29 09:48:30 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
2ee45995f2
Update config docs and create participant files script
2021-03-11 14:40:33 -05:00
1b0ee4bbf0
Add sleep intraday to fitbitjson_mysql
2021-03-11 14:39:20 -05:00
a420f5ef92
Add sleep summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
35968e2fd0
Migrate phone log sensor to new data stream
2021-03-11 14:37:22 -05:00
47e1b33816
Add hr intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
47f449555a
Add hr summary to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
72f6b2d621
Add steps intraday to fitbitjson_mysql
2021-03-11 14:37:22 -05:00
4825962361
Migrate phone screen sensor to new data stream
2021-03-11 14:35:34 -05:00
c1682d8cd3
Migrate phone calls sensor to new data stream
2021-03-11 14:35:34 -05:00
1063b4ca65
Add steps summary to fitbitjson_mysql
2021-03-11 14:35:34 -05:00
f65e3c8b1a
Migrate empatica sensors to new data stream
2021-03-11 14:35:34 -05:00
Primoz
junos
Meng Li
kirtirajk
JulioV