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38 Commits (notes)

Author SHA1 Message Date
Primoz 0d81ad5756 Debug assignment of segments to rows 2022-10-19 13:35:04 +00:00
Primoz e88bbd548f Add new daily segment and filter by segment in the cleaning script. 2022-10-18 09:15:00 +00:00
Primoz 536b9494cd Cleaning script corrections 2022-09-27 14:12:08 +00:00
Primoz 15d792089d Changes in cleaning script: 
- target extracted from config to remove rows where target is nan
- prepared sns.heatmap for further missing values analysis
- necessary changes in config and participant p01
- picture of heatmap which shows the values state after cleaning
 2022-09-01 10:33:36 +00:00
Primoz 6ba4a66deb Squashed commit of the following: 
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date:   Wed Jul 20 13:49:22 2022 +0000

    Environment version change.

commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 16:10:07 2022 +0000

    Enabled cleaning for all participants + standardization files.

commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 14:14:51 2022 +0000

    Features cleaning fixes after testing. Visualization script for phone features values.

commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 19 09:05:14 2022 +0000

    Revert "Necessary config changes."

    This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.

commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 13:19:47 2022 +0000

    Adding cleaning function condition and cleaning functionality.

commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:51:56 2022 +0000

    Translation of the cleaning individual RAPIDS function from R to py.

commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 18 12:02:18 2022 +0000

    Necessary config changes.

commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 15:26:00 2022 +0000

    Modified snakemake rule to dynamically choose script extention.

commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 14:43:08 2022 +0000

    Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.

commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 09:49:41 2022 +0000

    gitignore: adding required files so that RAPIDS can be run successfully.

commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 15 08:34:19 2022 +0000

    Standardization bug fixes

commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date:   Thu Jul 14 15:28:02 2022 +0000

    Seperate rules for empatica vs. nonempatica standardization.
    Parameter in config that controls the creation of standardized merged files for individual and all participants..

commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date:   Tue Jul 12 14:23:03 2022 +0000

    Preparing for final csvs' standardization.

commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:47 2022 +0000

    Revert "Changes in config to be reverted."

    This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.

commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 12:08:26 2022 +0000

    Enabled standardization for rest (previously active)  phone features.
    Testing still needed.

commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 09:07:55 2022 +0000

    Enabled standardization for phone calls.
    All steps completed and tested.

commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date:   Mon Jul 11 07:47:51 2022 +0000

    Changes in config to be reverted.

commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:24 2022 +0000

    Standardization for the rest of the features.

commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date:   Fri Jul 8 14:11:08 2022 +0000

    README update again
 2022-07-20 13:51:22 +00:00
Primoz a5480f1369 Few changes during addition to file structure. 2022-07-04 13:00:47 +00:00
Primoz dda4554d46 Various small changes. 2022-06-15 13:57:46 +00:00
primoz f371249b99 First order features standardization WIP 2022-06-09 13:35:15 +00:00
Primoz 2a8f58f5c8 Patching IBI with BVP. WIP 2022-05-20 13:18:45 +00:00
Primoz 9cf9e1fe14 Testing and modifying the code with different E4 data. 2022-05-10 11:36:49 +00:00
Primoz c050174ca3 Various minimal changes. 2022-03-31 09:16:00 +00:00
Primoz a357138f6e Added CF for HRV and shortened test data 2022-03-30 15:01:24 +00:00
= ab0b9227d7 Added ACC calculated features and shorter version of ACC data. 2022-03-29 09:41:51 +00:00
Primoz 191e53e543 Added cf provider for EDA feature processing. 2022-03-23 15:13:53 +00:00
Primoz 3f8e1cc252 Empatica features calculations with an example ZIP 2022-03-16 15:03:32 +00:00
Primoz dc2b462145 Reseting files to defaults - for Minimal Working Example 2022-03-16 13:30:19 +00:00
junos b29f902915 Look into ESM table for device_id. 2021-12-15 20:18:12 +01:00
junos 5a9252e46e Merge remote-tracking branch 'origin/master' 2021-12-15 18:32:36 +01:00
junos 4485c4c95e Delete columns we don't have. 
Rename light table.
Correct timesegments.
 2021-12-08 20:02:47 +01:00
junos 2b52f686b3 Define daily segments. 2021-12-08 18:20:22 +01:00
Meng Li 3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider (#168) 
* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider

* Update test config files
 2021-11-18 18:35:27 -05:00
Weiyu 502c1c36e2 documented phone_battery_test and added event tests 2021-04-08 16:50:18 -04:00
JulioV d0858f8833 Fix overlapping periodic time segments 2021-03-28 15:29:07 -04:00
Meng Li f8afef8767 Add script & docs to create multi timezones file 2021-03-25 16:22:25 -04:00
JulioV 614e759551 Refactor day segments to time segments 2020-12-02 18:41:03 -05:00
JulioV 1ea2730afd Update minimal workflow example docs 2020-11-04 13:27:58 -05:00
JulioV 1d04aa6807 Add check for non-overlapping event day segments 2020-10-23 12:15:26 -04:00
kaguillera ca14eba8e1 Initial testing restructure for 30mins segments 2020-09-18 19:14:07 -04:00
JulioV 4dc8d38c66 Optimise assign to day segment 2020-09-16 14:54:20 -04:00
JulioV 3c45f6b152 Refactor assign to day segment 2020-09-14 14:21:36 -04:00
JulioV 31ec5b0da4 Finalise new day segment structure with calls as example 2020-08-26 12:09:53 -04:00
JulioV c2d011fb6a Add base functions to compute_day_segments.py 2020-08-20 14:51:22 -04:00
JulioV b59f1715fc Add the daysegments files 2020-08-20 14:51:22 -04:00
JulioV 162ffd019c Fix error related to external participant file for testing 2020-08-11 18:59:52 -04:00
kaguillera 8c5497ebc0 Fix Travis minor issue 2020-08-11 17:25:08 -04:00
JulioV 63310b7b90 Remove white spaces at the end of some categories 2020-03-12 13:25:06 -04:00
JulioV 9d00f14f7f Add category (genre) to foreground apps 2020-01-15 18:28:56 -05:00
JulioV 3d2557a595 Add empty data folder 2019-10-24 17:20:11 -04:00