rapids/environment.yml

166 lines
3.3 KiB
YAML
Raw Normal View History

name: rapids
2019-10-30 22:45:32 +01:00
channels:
- conda-forge
2020-05-04 19:04:02 +02:00
- defaults
2019-10-30 22:45:32 +01:00
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- _py-xgboost-mutex=2.0
- appdirs=1.4.4
2020-12-18 20:06:28 +01:00
- arrow=0.16.0
- asn1crypto=1.4.0
- astropy=4.2.1
- attrs=20.3.0
- binaryornot=0.4.4
- blas=1.0
- brotlipy=0.7.0
- bzip2=1.0.8
- ca-certificates=2021.7.5
- certifi=2021.5.30
2020-12-18 20:06:28 +01:00
- cffi=1.14.4
- chardet=3.0.4
- click=7.1.2
- colorama=0.4.4
- cookiecutter=1.6.0
- cryptography=3.3.1
- datrie=0.8.2
2020-12-18 20:06:28 +01:00
- docutils=0.16
- future=0.18.2
- gitdb=4.0.5
- gitdb2=4.0.2
- gitpython=3.1.11
2020-12-18 20:06:28 +01:00
- idna=2.10
- imbalanced-learn=0.6.2
- importlib-metadata=2.0.0
- importlib_metadata=2.0.0
- intel-openmp=2019.4
2020-12-18 20:06:28 +01:00
- jinja2=2.11.2
- jinja2-time=0.2.0
- joblib=1.0.0
- jsonschema=3.2.0
- ld_impl_linux-64=2.36.1
- libblas=3.8.0
- libcblas=3.8.0
- libcxx=10.0.0
- libcxxabi=10.0.0
- libedit=3.1.20191231
2020-12-18 20:06:28 +01:00
- libffi=3.3
- libgcc-ng=11.2.0
2019-12-02 21:15:56 +01:00
- libgfortran
- libgfortran
- libgfortran
- liblapack=3.8.0
- libopenblas=0.3.10
- libstdcxx-ng=11.2.0
- libxgboost=0.90
- libzlib=1.2.11
- lightgbm=3.1.1
- llvm-openmp=10.0.0
- markupsafe=1.1.1
2020-12-18 20:06:28 +01:00
- mkl
- mkl-service=2.3.0
- mkl_fft=1.2.0
- mkl_random=1.1.1
- more-itertools=8.6.0
2020-12-18 20:06:28 +01:00
- ncurses=6.2
- numpy=1.19.2
- numpy-base=1.19.2
- openblas=0.3.4
- openssl=1.1.1k
- pandas=1.1.5
- pbr=5.5.1
- pip=20.3.3
2020-12-18 20:06:28 +01:00
- plotly=4.14.1
- poyo=0.5.0
- psutil=5.7.2
- py-xgboost=0.90
2020-12-18 20:06:28 +01:00
- pycparser=2.20
- pyerfa=1.7.1.1
- pyopenssl=20.0.1
- pysocks=1.7.1
- python=3.7.9
- python-dateutil=2.8.1
- python_abi=3.7
2020-12-18 20:06:28 +01:00
- pytz=2020.4
- pyyaml=5.3.1
- readline=8.0
2020-12-18 20:06:28 +01:00
- requests=2.25.0
- retrying=1.3.3
- setuptools=51.0.0
2020-12-18 20:06:28 +01:00
- six=1.15.0
- smmap=3.0.4
- smmap2=3.0.1
2020-12-18 20:06:28 +01:00
- sqlite=3.33.0
- threadpoolctl=2.1.0
- tk=8.6.10
2021-08-16 17:04:03 +02:00
- tqdm=4.62.0
2020-12-18 20:06:28 +01:00
- urllib3=1.25.11
- wheel=0.36.2
- whichcraft=0.6.1
2020-12-18 20:06:28 +01:00
- wrapt=1.12.1
- xgboost=0.90
- xz=5.2.5
- yaml=0.2.5
- zipp=3.4.0
- zlib=1.2.11
2019-10-30 22:45:32 +01:00
- pip:
- amply==0.1.4
- auto-sklearn==0.14.7
- bidict==0.22.0
- biosppy==0.8.0
- build==0.8.0
- cached-property==1.5.2
- cloudpickle==2.2.0
2019-10-30 22:45:32 +01:00
- configargparse==0.15.1
- configspace==0.4.21
Squashed commit of the following: commit 31a47a5ee4569264e39d7c445525a6e64bb7700a Author: Primoz <sisko.primoz@gmail.com> Date: Wed Jul 20 13:49:22 2022 +0000 Environment version change. commit 5b274ed8993f58e783bda6d82fce936764209c28 Author: Primoz <sisko.primoz@gmail.com> Date: Tue Jul 19 16:10:07 2022 +0000 Enabled cleaning for all participants + standardization files. commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924 Author: Primoz <sisko.primoz@gmail.com> Date: Tue Jul 19 14:14:51 2022 +0000 Features cleaning fixes after testing. Visualization script for phone features values. commit 176178d73b154c30b9eb9eb4a67514f00d6a924e Author: Primoz <sisko.primoz@gmail.com> Date: Tue Jul 19 09:05:14 2022 +0000 Revert "Necessary config changes." This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0. commit 26ea6512c9d512f95837e7b047fe510c1d196403 Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 18 13:19:47 2022 +0000 Adding cleaning function condition and cleaning functionality. commit 575c29eef9c21e6f2d7832871e73bc0941643734 Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 18 12:51:56 2022 +0000 Translation of the cleaning individual RAPIDS function from R to py. commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0 Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 18 12:02:18 2022 +0000 Necessary config changes. commit b5669f51612fbd8378848615d639677851ab032f Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 15 15:26:00 2022 +0000 Modified snakemake rule to dynamically choose script extention. commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 15 14:43:08 2022 +0000 Trying to modify the snakefile rule to execute scripts in two languages depended on the provider. commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9 Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 15 09:49:41 2022 +0000 gitignore: adding required files so that RAPIDS can be run successfully. commit 71018ab178256970535e78961602ab8c7f0ebb14 Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 15 08:34:19 2022 +0000 Standardization bug fixes commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc Author: Primoz <sisko.primoz@gmail.com> Date: Thu Jul 14 15:28:02 2022 +0000 Seperate rules for empatica vs. nonempatica standardization. Parameter in config that controls the creation of standardized merged files for individual and all participants.. commit 90f902778565e0896d3bae22ae8551be8b487e67 Author: Primoz <sisko.primoz@gmail.com> Date: Tue Jul 12 14:23:03 2022 +0000 Preparing for final csvs' standardization. commit d25dde3998786a9a582f5cda544ee104386778f9 Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 11 12:08:47 2022 +0000 Revert "Changes in config to be reverted." This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313. commit 6b23e70857e63deda98eb98d190af9090626c84b Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 11 12:08:26 2022 +0000 Enabled standardization for rest (previously active) phone features. Testing still needed. commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 11 09:07:55 2022 +0000 Enabled standardization for phone calls. All steps completed and tested. commit bea7608e7095021fb7c53a9afa07074448fe4313 Author: Primoz <sisko.primoz@gmail.com> Date: Mon Jul 11 07:47:51 2022 +0000 Changes in config to be reverted. commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 8 14:11:24 2022 +0000 Standardization for the rest of the features. commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7 Author: Primoz <sisko.primoz@gmail.com> Date: Fri Jul 8 14:11:08 2022 +0000 README update again
2022-07-20 15:51:22 +02:00
- cr-features==0.2.1
- cycler==0.11.0
- cython==0.29.32
- dask==2022.2.0
- decorator==4.4.2
- distributed==2022.2.0
- distro==1.7.0
- emcee==3.1.2
- fonttools==4.33.2
- fsspec==2022.8.2
- h5py==3.6.0
- heapdict==1.0.1
- hmmlearn==0.2.7
- ipython-genutils==0.2.0
- jupyter-core==4.6.3
2022-03-31 11:16:00 +02:00
- kiwisolver==1.4.2
- liac-arff==2.5.0
- locket==1.0.0
- matplotlib==3.5.1
- msgpack==1.0.4
- nbformat==5.0.7
- opencv-python==4.5.5.64
- packaging==21.3
- partd==1.3.0
- peakutils==1.3.3
- pep517==0.13.0
- pillow==9.1.0
2020-12-18 20:06:28 +01:00
- pulp==2.4
- pynisher==0.6.4
- pyparsing==2.4.7
- pyrfr==0.8.3
2019-10-30 22:45:32 +01:00
- pyrsistent==0.15.5
2022-03-25 17:27:28 +01:00
- pywavelets==1.3.0
- ratelimiter==1.2.0.post0
- scikit-learn==0.24.2
- scipy==1.7.3
2022-06-15 15:57:46 +02:00
- seaborn==0.11.2
- shortuuid==1.0.8
- smac==1.2
2020-12-18 20:06:28 +01:00
- snakemake==5.30.2
- sortedcontainers==2.4.0
- tblib==1.7.0
- tomli==2.0.1
- toolz==0.12.0
- toposort==1.5
- tornado==6.2
- traitlets==4.3.3
- typing-extensions==4.2.0
- zict==2.2.0
prefix: /opt/conda/envs/rapids