Commit Graph

338 Commits (055e87dbac54fd15c1e933ac167f1152f35fc8c4)

Author SHA1 Message Date
junos a5c09a292f Move function to helper.py 2022-11-16 18:13:30 +01:00
junos 848416bf6a Merge branch 'master' into ml_pipeline
# Conflicts:
#	.gitignore
#	rapids
2022-11-16 17:46:01 +01:00
Primoz b59798df26 Add a new file tailored for stressfulness event regression. 2022-11-16 14:49:40 +01:00
Primoz 87ebb9f296 Delete files ... add to gitignore 2022-11-16 11:08:03 +01:00
Primoz 1d8dcf8b21 Add 30 min features data and modify script. 2022-11-02 15:16:19 +01:00
Primoz 9f7fa0c8e0 Add 18 hour daily data and slightly modify jupyter script. 2022-10-18 10:29:59 +02:00
Primoz cdff4da930 Merge branch 'ml_pipeline' of https://repo.ijs.si/junoslukan/straw2analysis into ml_pipeline 2022-10-17 22:15:17 +02:00
Primoz ad5f50babe Correctly imputed data uploaded on STRAW (all targets) 2022-10-12 12:48:10 +02:00
Primoz 466cd3dc23 Processing of a newly cleaned script. Addition of two ML models. And modifications with one hot encoding. 2022-10-10 16:47:00 +02:00
junos 2d2f0b916f Prepare a function to run all models from an input. 2022-08-31 18:46:14 +02:00
junos 1dcd060211 Merge branch 'rapids' 2022-08-31 16:20:42 +02:00
junos 8b8d626cf0 Merge branch 'ml_pipeline' into rapids
# Conflicts:
#	exploration/ex_ml_pipeline.py
2022-08-31 16:20:11 +02:00
junos 75782a53c2 Ignore some more data and commit RAPIDS submodule. 2022-08-31 16:13:47 +02:00
Primoz 27b2282ee0 Datasets (phone&E4 features) and Jupyter script of regression models. 2022-08-24 16:18:40 +02:00
junos a8fd96d2f1 Add analysis using RAPIDS. 2022-08-23 16:41:41 +02:00
junos 79fd5298be Update RAPIDS. 2022-03-16 19:20:25 +01:00
junos ff006c0834 Update RAPIDS. 2022-03-16 15:52:19 +01:00
junos 6295cc8e91 Add baseline data capabilities. 2022-02-04 18:39:32 +01:00
junos 360ec7de4b Update RAPIDS. 2022-02-04 17:20:11 +01:00
junos e177b15058 Clean features across participants.
Explore the best linear regression feature.
2022-01-19 13:41:09 +01:00
junos 832eb6137e ML with RAPIDS and missing values. 2022-01-19 12:53:03 +01:00
junos 702b091d73 Read RAPIDS features and create columns. 2022-01-07 17:00:12 +01:00
junos 257a044227 Update RAPIDS. 2022-01-07 12:22:50 +01:00
junos ae358f1e24 Various improvements of RAPIDS. 2021-12-15 20:22:22 +01:00
junos 4dee4b6fc1 Add info about updating RAPIDS. 2021-12-15 20:21:59 +01:00
junos ed3483ace4 Update RAPIDS to v1.7.1. 2021-12-15 18:35:26 +01:00
junos de10269d36 Export categories and add csv. 2021-12-15 18:26:20 +01:00
junos 7e8e922d71 Debugging of RAPIDS. 2021-12-15 18:25:53 +01:00
junos c4aacfffe1 Debug a ValueError in RAPIDS and add demo. 2021-12-15 16:03:49 +01:00
junos 2e1e771b3d Correct errors in RAPIDS config. 2021-12-09 17:34:37 +01:00
junos 54c712b1cd Further adapts RAPIDS and add graphical examples. 2021-12-08 19:20:53 +01:00
junos 375cb10c1e Adapt RAPIDS for our use case. 2021-12-08 18:39:10 +01:00
junos 689535e444 Add rules for usernames and timezones. 2021-12-01 18:22:56 +01:00
junos f5c17aa7ce Incorporate DB query for usernames into snakemake workflow. 2021-12-01 18:14:27 +01:00
junos 7d0355d095 Gather usernames from DB to create CSV. 2021-12-01 17:22:22 +01:00
junos 6eca98962f Export timezone info, too. 2021-12-01 17:08:24 +01:00
junos 0e6a18a660 Prepare data for export to CSV. 2021-12-01 16:50:43 +01:00
junos cf3801b120 Import participants' wristband info. 2021-12-01 11:55:58 +01:00
junos 578f5ed5f3 Start preparing the true usernames CSV file. 2021-12-01 11:29:22 +01:00
junos 6f9b513ba0 Make the participants rule run. 2021-11-29 18:37:50 +01:00
junos c2b27aef45 Add yaml files to submodule. 2021-11-24 19:12:36 +01:00
junos 4bb01ba871 Add functions to prepare participants files. 2021-11-24 19:09:06 +01:00
junos 080dc1d1fe Add instructions for RAPIDS. 2021-11-18 17:22:08 +01:00
junos 4e87664fd6 Force UNIX eol characters. 2021-11-17 19:20:19 +01:00
junos c0ea17dbe3 Update rapids. 2021-11-17 18:58:12 +01:00
junos 1d65a31d8c Update rapids submodule. 2021-11-17 12:59:12 +01:00
junos d4ba701202 Add the rapids fork submodule.
Reproducible Analysis Pipeline for Data Streams
2021-11-17 12:47:42 +01:00
junos e33a49c9fc Add a demo of pipeline. 2021-11-17 10:44:49 +01:00
junos d34c2ec5e9 Merge branch 'ambient' into ml_pipeline 2021-11-17 10:39:55 +01:00
junos 005b09cfdf [WIP] Fix tests to use pyprojroot. 2021-10-29 12:07:12 +02:00