Primoz
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4cfe5a3a98
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Disable discarding rows if DATA_YIELD_RATIO_THRESHOLD==0.
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2022-08-19 13:10:56 +00:00 |
Primoz
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607da820f2
|
Configuration and cleaning changes
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2022-08-18 14:21:05 +00:00 |
Primoz
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fb577bc9ad
|
Squashed commit of the following:
commit 43ecc243cb62bb31eed85cb477ca4131555c7fe7
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 22 15:26:09 2022 +0000
Adding TODO comments
commit 2df1ebf90c3a93812b112b8ed0ee4e23cd74533f
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 21 13:59:23 2022 +0000
README update
commit 5182c2b16dff3537aad42984b8ea5214743cdb32
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 21 11:03:01 2022 +0000
Few corrections for all_cleaning
commit 3d9254c1b3bed6e95e631d4e0402548830a19534
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 21 10:28:05 2022 +0000
Adding the min overlap for corr threshold and preservation of esm cols.
commit e27c49cc8fa4c51f9fe8e593a8d25e9a032ab393
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 21 09:02:00 2022 +0000
Commenting and cleaning.
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Jul 20 13:49:22 2022 +0000
Environment version change.
commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 16:10:07 2022 +0000
Enabled cleaning for all participants + standardization files.
commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 14:14:51 2022 +0000
Features cleaning fixes after testing. Visualization script for phone features values.
commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 09:05:14 2022 +0000
Revert "Necessary config changes."
This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.
commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 13:19:47 2022 +0000
Adding cleaning function condition and cleaning functionality.
commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:51:56 2022 +0000
Translation of the cleaning individual RAPIDS function from R to py.
commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:02:18 2022 +0000
Necessary config changes.
commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 15:26:00 2022 +0000
Modified snakemake rule to dynamically choose script extention.
commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 14:43:08 2022 +0000
Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.
commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 09:49:41 2022 +0000
gitignore: adding required files so that RAPIDS can be run successfully.
commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 08:34:19 2022 +0000
Standardization bug fixes
commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 14 15:28:02 2022 +0000
Seperate rules for empatica vs. nonempatica standardization.
Parameter in config that controls the creation of standardized merged files for individual and all participants..
commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 12 14:23:03 2022 +0000
Preparing for final csvs' standardization.
commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:47 2022 +0000
Revert "Changes in config to be reverted."
This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.
commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:26 2022 +0000
Enabled standardization for rest (previously active) phone features.
Testing still needed.
commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 09:07:55 2022 +0000
Enabled standardization for phone calls.
All steps completed and tested.
commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 07:47:51 2022 +0000
Changes in config to be reverted.
commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:24 2022 +0000
Standardization for the rest of the features.
commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:08 2022 +0000
README update again
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2022-07-22 15:31:30 +00:00 |
Primoz
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6ba4a66deb
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Squashed commit of the following:
commit 31a47a5ee4569264e39d7c445525a6e64bb7700a
Author: Primoz <sisko.primoz@gmail.com>
Date: Wed Jul 20 13:49:22 2022 +0000
Environment version change.
commit 5b274ed8993f58e783bda6d82fce936764209c28
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 16:10:07 2022 +0000
Enabled cleaning for all participants + standardization files.
commit 203fdb31e0f3c647ef8c8a60cb9531831b7ab924
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 14:14:51 2022 +0000
Features cleaning fixes after testing. Visualization script for phone features values.
commit 176178d73b154c30b9eb9eb4a67514f00d6a924e
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 19 09:05:14 2022 +0000
Revert "Necessary config changes."
This reverts commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0.
commit 26ea6512c9d512f95837e7b047fe510c1d196403
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 13:19:47 2022 +0000
Adding cleaning function condition and cleaning functionality.
commit 575c29eef9c21e6f2d7832871e73bc0941643734
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:51:56 2022 +0000
Translation of the cleaning individual RAPIDS function from R to py.
commit 6ec1ef50430d2e1f5ce4670d505d5e84ac47f0a0
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 18 12:02:18 2022 +0000
Necessary config changes.
commit b5669f51612fbd8378848615d639677851ab032f
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 15:26:00 2022 +0000
Modified snakemake rule to dynamically choose script extention.
commit 66636be1e8ae4828228b37c59b9df1faf3fc3d3d
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 14:43:08 2022 +0000
Trying to modify the snakefile rule to execute scripts in two languages depended on the provider.
commit 574778b00f3cbb368ef4bc74de15cf5070c65ea9
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 09:49:41 2022 +0000
gitignore: adding required files so that RAPIDS can be run successfully.
commit 71018ab178256970535e78961602ab8c7f0ebb14
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 15 08:34:19 2022 +0000
Standardization bug fixes
commit 6253c470a624e6bfbb02e0c453b652452eb2dbbc
Author: Primoz <sisko.primoz@gmail.com>
Date: Thu Jul 14 15:28:02 2022 +0000
Seperate rules for empatica vs. nonempatica standardization.
Parameter in config that controls the creation of standardized merged files for individual and all participants..
commit 90f902778565e0896d3bae22ae8551be8b487e67
Author: Primoz <sisko.primoz@gmail.com>
Date: Tue Jul 12 14:23:03 2022 +0000
Preparing for final csvs' standardization.
commit d25dde3998786a9a582f5cda544ee104386778f9
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:47 2022 +0000
Revert "Changes in config to be reverted."
This reverts commit bea7608e7095021fb7c53a9afa07074448fe4313.
commit 6b23e70857e63deda98eb98d190af9090626c84b
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 12:08:26 2022 +0000
Enabled standardization for rest (previously active) phone features.
Testing still needed.
commit 8ec58a6f34ba3d42e5cc71d26e6d91837472ca5f
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 09:07:55 2022 +0000
Enabled standardization for phone calls.
All steps completed and tested.
commit bea7608e7095021fb7c53a9afa07074448fe4313
Author: Primoz <sisko.primoz@gmail.com>
Date: Mon Jul 11 07:47:51 2022 +0000
Changes in config to be reverted.
commit 4e84ca0e51bf709bff56fd09437b95310ec6bedd
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:24 2022 +0000
Standardization for the rest of the features.
commit cc581aa788e3d5c17131af8f3d5dd6b0c3b5aff7
Author: Primoz <sisko.primoz@gmail.com>
Date: Fri Jul 8 14:11:08 2022 +0000
README update again
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2022-07-20 13:51:22 +00:00 |
Primoz
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5a777ac79f
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Working version that integrates both phone and empatica feature calculations.
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2022-07-07 15:00:47 +00:00 |
Primoz
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887fd7dc72
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Merge branch 'empatica_calculating_features'
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2022-07-06 11:53:21 +00:00 |
Primoz
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5a4696c548
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Misc. changes
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2022-07-06 11:30:18 +00:00 |
Primoz
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a5480f1369
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Few changes during addition to file structure.
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2022-07-04 13:00:47 +00:00 |
Primoz
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505c3a86b9
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Testing different EDA findPeaks parameters.
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2022-06-30 15:15:37 +00:00 |
Primoz
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c851ab0763
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Fill EDA NaN values where numPeak is zero. Other small changes.
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2022-06-21 14:09:49 +00:00 |
Primoz
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a8cd16f88c
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Debugging eda_explorer
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2022-06-16 11:32:59 +00:00 |
Primoz
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dda4554d46
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Various small changes.
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2022-06-15 13:57:46 +00:00 |
Primoz
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212cf300f8
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Debugging EDA signal - preliminary step for imputation.
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2022-06-14 15:09:14 +00:00 |
Primoz
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9ea39dc557
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Standardization as a Snakefile's rule enabled for all E4 sensors.
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2022-06-13 18:17:30 +00:00 |
Primoz
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402059871f
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Making standardization as a rule. WIP: done only for BVP.
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2022-06-13 14:12:03 +00:00 |
Primoz
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094743244d
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Added SO feature for sum all rows that are non zero for BVP and IBI sensors.
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2022-06-13 10:51:22 +00:00 |
primoz
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e1d7607de4
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Extraction of additional SO features. Min/max has been changed to nsmallest/nlargest means.
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2022-06-10 12:34:48 +00:00 |
primoz
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f371249b99
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First order features standardization WIP
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2022-06-09 13:35:15 +00:00 |
primoz
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64e41cfa35
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Second order features standardization in config.yaml.
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2022-06-07 10:39:48 +00:00 |
primoz
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2acf6ff9fb
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Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections.
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2022-06-03 12:34:36 +00:00 |
primoz
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d300f0f8f0
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Fixed RAPIDS bug: error when IBI.csv is empty.
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2022-06-02 11:43:49 +00:00 |
Primoz
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fbf6a77dfc
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Small misc changes
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2022-06-02 06:41:53 +00:00 |
Primoz
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bb62497ba6
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Patching IBI with BVP - selecting appropriate pipeline entry point. WIP
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2022-05-24 11:07:18 +00:00 |
Primoz
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2a8f58f5c8
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Patching IBI with BVP. WIP
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2022-05-20 13:18:45 +00:00 |
Primoz
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6864cfe775
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Changes after thorough testing with available data.
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2022-05-13 13:35:34 +00:00 |
Primoz
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c1564f0cae
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Changed wrapper method calculate_feature to its newest version (for TEMP and ACC).
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2022-05-11 14:21:21 +00:00 |
Primoz
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31e36e7400
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Alternating Second order and full segment features corresponding to config settings.
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2022-05-11 08:50:15 +00:00 |
Primoz
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9cf9e1fe14
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Testing and modifying the code with different E4 data.
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2022-05-10 11:36:49 +00:00 |
Primoz
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f62a1302dd
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Cr-features corrections for ACC and TEMP sensors
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2022-05-09 11:01:52 +00:00 |
Primoz
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5638367999
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Implementation of the second order features.
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2022-04-25 13:07:03 +00:00 |
Primoz
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66451160e9
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Calculating HRV features with IBI.csv.
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2022-04-20 10:44:51 +00:00 |
=
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8c8fe1fec7
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Modifications, mostly imports, after changes in cr-features module.
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2022-04-19 13:24:46 +00:00 |
=
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075c64d1e5
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HRV: changed wrapper calcFeat method with specialized one.
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2022-04-14 11:51:53 +00:00 |
=
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3c058e4463
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Add option to calculate features within windows and store it in CSV (all sensors).
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2022-04-13 13:18:23 +00:00 |
junos
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11c64cfc1a
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Include all participants again.
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2022-04-12 17:20:19 +02:00 |
=
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74cf4ada1c
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Cr-feat window length for all empaticas sensors.
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2022-04-12 14:00:44 +00:00 |
junos
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f5688f6154
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Add a rule to merge sensor and baseline features.
And select target as before.
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2022-04-08 15:42:04 +02:00 |
junos
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50c0defca7
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Select target columns (no parsing necessary).
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2022-04-06 18:16:49 +02:00 |
junos
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ac86221662
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[WIP] Add a rule to parse targets.
Does nothing for now.
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2022-04-06 17:47:03 +02:00 |
junos
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cbc8ae4e03
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Add necessary checks for empty data frames.
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2022-04-05 18:58:09 +02:00 |
junos
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ed298a9479
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Implement the basic feature extraction steps.
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2022-04-05 15:46:02 +02:00 |
=
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1c42347b9b
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Small changes.
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2022-04-04 12:19:33 +00:00 |
Primoz
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c050174ca3
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Various minimal changes.
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2022-03-31 09:16:00 +00:00 |
Primoz
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a357138f6e
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Added CF for HRV and shortened test data
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2022-03-30 15:01:24 +00:00 |
junos
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7173ca13e3
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Rename a parameter.
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2022-03-30 10:40:53 +02:00 |
=
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ab0b9227d7
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Added ACC calculated features and shorter version of ACC data.
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2022-03-29 09:41:51 +00:00 |
=
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8b76c96e47
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Cleaning existing CF mains' and preparing src script for ACC.
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2022-03-28 14:18:29 +00:00 |
=
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393dab72f5
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Added components for the temperature features extraction.
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2022-03-28 12:37:02 +00:00 |
Primoz
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191e53e543
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Added cf provider for EDA feature processing.
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2022-03-23 15:13:53 +00:00 |
Primoz
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d3a3f01f29
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Preparation for the EDA features integration from CF.
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2022-03-22 15:36:52 +00:00 |