751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
3af8de6235
Create feature provider script.
2022-03-30 10:40:53 +02:00
9478dc94f2
Add an else.
...
This is to make sure that in case the reversing fails, we do not get any output items.
Snakemake will inform us of an error in this event.
2022-03-30 10:40:53 +02:00
c6144f8403
Reverse JCQ items.
2022-03-16 18:55:46 +01:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
19b9da0ba3
Separate function definitions from main.
2022-03-16 16:49:28 +01:00
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
5f293211a7
Reformat.
2022-03-15 13:28:51 +01:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
d4a4bbbff0
Remove unused columns.
2022-03-09 17:58:36 +01:00
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
42d62f16d0
Add RAPIDS mandatory columns for ESM.
2022-03-09 17:31:37 +01:00
2bef86b1da
Add a format for ESM and add to config.
2022-03-08 15:43:25 +01:00
d8e9a309f7
Rename features and write baseline_interim.
2022-03-08 15:10:36 +01:00
a3a4f04ffe
Setting with : produces NaNs.
2022-03-01 12:02:57 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
b5a6317f4b
Calculate JCQ control and demand control ratio.
...
Include norms and corresponding quartile.
2022-02-28 18:51:47 +01:00
2fed962644
Calculate JCQ demand score.
...
Hardcode question IDs to be reversed.
2022-02-28 18:30:41 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
9a74e74d08
Add the baseline features rule to snakefile.
...
Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
07da6be398
Add age, gender, and language as features.
...
Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
bf9c764c97
Split baseline data to participants.
...
And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
afa3b8546f
Mutate data in an R script.
...
The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
2022-01-26 16:34:19 +01:00
b17a7eff1a
Deal with inexplicable snakemake failure.
2022-01-07 18:11:38 +01:00
e1499a5ae2
Account for missing device_ids.
2021-12-15 20:41:28 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
352598f3da
Use absolute path to avoid RuleException.
2021-12-15 17:27:13 +01:00
70cada8bb8
Consider a subset of columns when dropping.
2021-12-15 16:14:33 +01:00
d2ed73dccf
Debug ValueError for index.
...
See exploration/debug_heatmap.py for illustration.
2021-12-15 16:03:04 +01:00
6f451e05ac
Bring back application_name.
...
This column still needs to be in the data, so add it in app_add_name.py.
Later, join categories by package hash.
2021-12-15 12:58:27 +01:00
4485c4c95e
Delete columns we don't have.
...
Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
37b3460b76
Use Empatica wristband numbers as provided in CSV.
2021-12-01 17:20:57 +01:00
22f9e0722d
Start preparing the true usernames CSV file.
2021-12-01 11:29:22 +01:00
0be4cd5a8f
Remove unnecessary library.
2021-11-30 17:08:07 +01:00
04ad2d0b81
Source specific container script.
...
It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
35d9779026
Prepare the tibble in requested format.
...
Write it to a CSV file.
2021-11-29 17:54:16 +01:00
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
181e4f0118
Add parameters to yaml file.
...
And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
ab84109d55
Prepare a function to compile participants data.
...
It combines functions from container.R
2021-11-24 19:07:56 +01:00
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
junos